Omics module#
Index > Omics
Auto-generated documentation for Omics type annotations stubs module mypy-boto3-omics.
How to install#
VSCode extension#
Add AWS Boto3
extension to your VSCode and run AWS boto3: Quick Start
command.
Click Modify
and select boto3 common
and Omics
.
From PyPI with pip#
Install boto3-stubs
for Omics
service.
# install with boto3 type annotations
python -m pip install 'boto3-stubs[omics]'
# Lite version does not provide session.client/resource overloads
# it is more RAM-friendly, but requires explicit type annotations
python -m pip install 'boto3-stubs-lite[omics]'
# standalone installation
python -m pip install mypy-boto3-omics
How to uninstall#
python -m pip uninstall -y mypy-boto3-omics
Usage#
Code samples can be found in Examples.
OmicsClient#
Type annotations and code completion for boto3.client("omics")
as OmicsClient
boto3 documentation
# OmicsClient usage example
from boto3.session import Session
from mypy_boto3_omics.client import OmicsClient
def get_client() -> OmicsClient:
return Session().client("omics")
Paginators#
Type annotations and code completion for paginators
from boto3.client("omics").get_paginator("...")
.
# ListAnnotationImportJobsPaginator usage example
from boto3.session import Session
from mypy_boto3_omics.paginator import ListAnnotationImportJobsPaginator
def get_list_annotation_import_jobs_paginator() -> ListAnnotationImportJobsPaginator:
return Session().client("omics").get_paginator("list_annotation_import_jobs"))
- ListAnnotationImportJobsPaginator
- ListAnnotationStoreVersionsPaginator
- ListAnnotationStoresPaginator
- ListMultipartReadSetUploadsPaginator
- ListReadSetActivationJobsPaginator
- ListReadSetExportJobsPaginator
- ListReadSetImportJobsPaginator
- ListReadSetUploadPartsPaginator
- ListReadSetsPaginator
- ListReferenceImportJobsPaginator
- ListReferenceStoresPaginator
- ListReferencesPaginator
- ListRunCachesPaginator
- ListRunGroupsPaginator
- ListRunTasksPaginator
- ListRunsPaginator
- ListSequenceStoresPaginator
- ListSharesPaginator
- ListVariantImportJobsPaginator
- ListVariantStoresPaginator
- ListWorkflowsPaginator
Waiters#
Type annotations and code completion for waiters
from boto3.client("omics").get_waiter("...")
.
# AnnotationImportJobCreatedWaiter usage example
from boto3.session import Session
from mypy_boto3_omics.waiter import AnnotationImportJobCreatedWaiter
def get_annotation_import_job_created_waiter() -> AnnotationImportJobCreatedWaiter:
return Session().client("omics").get_waiter("annotation_import_job_created")
- AnnotationImportJobCreatedWaiter
- AnnotationStoreCreatedWaiter
- AnnotationStoreDeletedWaiter
- AnnotationStoreVersionCreatedWaiter
- AnnotationStoreVersionDeletedWaiter
- ReadSetActivationJobCompletedWaiter
- ReadSetExportJobCompletedWaiter
- ReadSetImportJobCompletedWaiter
- ReferenceImportJobCompletedWaiter
- RunCompletedWaiter
- RunRunningWaiter
- TaskCompletedWaiter
- TaskRunningWaiter
- VariantImportJobCreatedWaiter
- VariantStoreCreatedWaiter
- VariantStoreDeletedWaiter
- WorkflowActiveWaiter
Literals#
Type annotations for literals used in methods and schema.
# AcceleratorsType usage example
from mypy_boto3_omics.literals import AcceleratorsType
def get_value() -> AcceleratorsType:
return "GPU"
- AcceleratorsType
- AnnotationImportJobCreatedWaiterName
- AnnotationStoreCreatedWaiterName
- AnnotationStoreDeletedWaiterName
- AnnotationStoreVersionCreatedWaiterName
- AnnotationStoreVersionDeletedWaiterName
- AnnotationTypeType
- CacheBehaviorType
- CreationTypeType
- ETagAlgorithmFamilyType
- ETagAlgorithmType
- EncryptionTypeType
- FileTypeType
- FormatToHeaderKeyType
- JobStatusType
- ListAnnotationImportJobsPaginatorName
- ListAnnotationStoreVersionsPaginatorName
- ListAnnotationStoresPaginatorName
- ListMultipartReadSetUploadsPaginatorName
- ListReadSetActivationJobsPaginatorName
- ListReadSetExportJobsPaginatorName
- ListReadSetImportJobsPaginatorName
- ListReadSetUploadPartsPaginatorName
- ListReadSetsPaginatorName
- ListReferenceImportJobsPaginatorName
- ListReferenceStoresPaginatorName
- ListReferencesPaginatorName
- ListRunCachesPaginatorName
- ListRunGroupsPaginatorName
- ListRunTasksPaginatorName
- ListRunsPaginatorName
- ListSequenceStoresPaginatorName
- ListSharesPaginatorName
- ListVariantImportJobsPaginatorName
- ListVariantStoresPaginatorName
- ListWorkflowsPaginatorName
- ReadSetActivationJobCompletedWaiterName
- ReadSetActivationJobItemStatusType
- ReadSetActivationJobStatusType
- ReadSetExportJobCompletedWaiterName
- ReadSetExportJobItemStatusType
- ReadSetExportJobStatusType
- ReadSetFileType
- ReadSetImportJobCompletedWaiterName
- ReadSetImportJobItemStatusType
- ReadSetImportJobStatusType
- ReadSetPartSourceType
- ReadSetStatusType
- ReferenceCreationTypeType
- ReferenceFileType
- ReferenceImportJobCompletedWaiterName
- ReferenceImportJobItemStatusType
- ReferenceImportJobStatusType
- ReferenceStatusType
- ResourceOwnerType
- RunCacheStatusType
- RunCompletedWaiterName
- RunExportType
- RunLogLevelType
- RunRetentionModeType
- RunRunningWaiterName
- RunStatusType
- SchemaValueTypeType
- ShareResourceTypeType
- ShareStatusType
- StorageTypeType
- StoreFormatType
- StoreStatusType
- TaskCompletedWaiterName
- TaskRunningWaiterName
- TaskStatusType
- VariantImportJobCreatedWaiterName
- VariantStoreCreatedWaiterName
- VariantStoreDeletedWaiterName
- VersionStatusType
- WorkflowActiveWaiterName
- WorkflowEngineType
- WorkflowExportType
- WorkflowStatusType
- WorkflowTypeType
- OmicsServiceName
- ServiceName
- ResourceServiceName
- PaginatorName
- WaiterName
- RegionName
Type definitions#
Type annotations for type definitions used in methods and schema.
- AbortMultipartReadSetUploadRequestRequestTypeDef
- AcceptShareRequestRequestTypeDef
- ResponseMetadataTypeDef
- TimestampTypeDef
- ActivateReadSetJobItemTypeDef
- ActivateReadSetSourceItemTypeDef
- AnnotationImportItemDetailTypeDef
- AnnotationImportItemSourceTypeDef
- AnnotationImportJobItemTypeDef
- ReferenceItemTypeDef
- SseConfigTypeDef
- AnnotationStoreVersionItemTypeDef
- BatchDeleteReadSetRequestRequestTypeDef
- ReadSetBatchErrorTypeDef
- BlobTypeDef
- CancelAnnotationImportRequestRequestTypeDef
- CancelRunRequestRequestTypeDef
- CancelVariantImportRequestRequestTypeDef
- CompleteReadSetUploadPartListItemTypeDef
- CreateMultipartReadSetUploadRequestRequestTypeDef
- CreateRunCacheRequestRequestTypeDef
- CreateRunGroupRequestRequestTypeDef
- CreateShareRequestRequestTypeDef
- WorkflowParameterTypeDef
- DeleteAnnotationStoreRequestRequestTypeDef
- DeleteAnnotationStoreVersionsRequestRequestTypeDef
- VersionDeleteErrorTypeDef
- DeleteReferenceRequestRequestTypeDef
- DeleteReferenceStoreRequestRequestTypeDef
- DeleteRunCacheRequestRequestTypeDef
- DeleteRunGroupRequestRequestTypeDef
- DeleteRunRequestRequestTypeDef
- DeleteSequenceStoreRequestRequestTypeDef
- DeleteShareRequestRequestTypeDef
- DeleteVariantStoreRequestRequestTypeDef
- DeleteWorkflowRequestRequestTypeDef
- ETagTypeDef
- ExportReadSetDetailTypeDef
- ExportReadSetJobDetailTypeDef
- ExportReadSetTypeDef
- ReadSetS3AccessTypeDef
- FilterTypeDef
- VcfOptionsTypeDef
- WaiterConfigTypeDef
- GetAnnotationImportRequestRequestTypeDef
- GetAnnotationStoreRequestRequestTypeDef
- GetAnnotationStoreVersionRequestRequestTypeDef
- GetReadSetActivationJobRequestRequestTypeDef
- GetReadSetExportJobRequestRequestTypeDef
- GetReadSetImportJobRequestRequestTypeDef
- GetReadSetMetadataRequestRequestTypeDef
- SequenceInformationTypeDef
- GetReadSetRequestRequestTypeDef
- GetReferenceImportJobRequestRequestTypeDef
- ImportReferenceSourceItemTypeDef
- GetReferenceMetadataRequestRequestTypeDef
- GetReferenceRequestRequestTypeDef
- GetReferenceStoreRequestRequestTypeDef
- GetRunCacheRequestRequestTypeDef
- GetRunGroupRequestRequestTypeDef
- GetRunRequestRequestTypeDef
- RunLogLocationTypeDef
- GetRunTaskRequestRequestTypeDef
- GetSequenceStoreRequestRequestTypeDef
- SequenceStoreS3AccessTypeDef
- GetShareRequestRequestTypeDef
- ShareDetailsTypeDef
- GetVariantImportRequestRequestTypeDef
- VariantImportItemDetailTypeDef
- GetVariantStoreRequestRequestTypeDef
- GetWorkflowRequestRequestTypeDef
- ImportReadSetJobItemTypeDef
- SourceFilesTypeDef
- ImportReferenceJobItemTypeDef
- ListAnnotationImportJobsFilterTypeDef
- PaginatorConfigTypeDef
- ListAnnotationStoreVersionsFilterTypeDef
- ListAnnotationStoresFilterTypeDef
- ListMultipartReadSetUploadsRequestRequestTypeDef
- MultipartReadSetUploadListItemTypeDef
- ReadSetUploadPartListItemTypeDef
- ReferenceListItemTypeDef
- ListRunCachesRequestRequestTypeDef
- RunCacheListItemTypeDef
- ListRunGroupsRequestRequestTypeDef
- RunGroupListItemTypeDef
- ListRunTasksRequestRequestTypeDef
- TaskListItemTypeDef
- ListRunsRequestRequestTypeDef
- RunListItemTypeDef
- ListTagsForResourceRequestRequestTypeDef
- ListVariantImportJobsFilterTypeDef
- VariantImportJobItemTypeDef
- ListVariantStoresFilterTypeDef
- ListWorkflowsRequestRequestTypeDef
- WorkflowListItemTypeDef
- ReadOptionsTypeDef
- StartReadSetActivationJobSourceItemTypeDef
- StartReferenceImportJobSourceItemTypeDef
- StartRunRequestRequestTypeDef
- VariantImportItemSourceTypeDef
- TsvStoreOptionsOutputTypeDef
- TagResourceRequestRequestTypeDef
- TsvStoreOptionsTypeDef
- TsvVersionOptionsOutputTypeDef
- TsvVersionOptionsTypeDef
- UntagResourceRequestRequestTypeDef
- UpdateAnnotationStoreRequestRequestTypeDef
- UpdateAnnotationStoreVersionRequestRequestTypeDef
- UpdateRunCacheRequestRequestTypeDef
- UpdateRunGroupRequestRequestTypeDef
- UpdateVariantStoreRequestRequestTypeDef
- UpdateWorkflowRequestRequestTypeDef
- AcceptShareResponseTypeDef
- CompleteMultipartReadSetUploadResponseTypeDef
- CreateMultipartReadSetUploadResponseTypeDef
- CreateRunCacheResponseTypeDef
- CreateRunGroupResponseTypeDef
- CreateShareResponseTypeDef
- CreateWorkflowResponseTypeDef
- DeleteAnnotationStoreResponseTypeDef
- DeleteShareResponseTypeDef
- DeleteVariantStoreResponseTypeDef
- EmptyResponseMetadataTypeDef
- GetReadSetResponseTypeDef
- GetReferenceResponseTypeDef
- GetRunCacheResponseTypeDef
- GetRunGroupResponseTypeDef
- GetRunTaskResponseTypeDef
- ListTagsForResourceResponseTypeDef
- StartAnnotationImportResponseTypeDef
- StartReadSetActivationJobResponseTypeDef
- StartReadSetExportJobResponseTypeDef
- StartReadSetImportJobResponseTypeDef
- StartReferenceImportJobResponseTypeDef
- StartRunResponseTypeDef
- StartVariantImportResponseTypeDef
- UpdateAnnotationStoreVersionResponseTypeDef
- UploadReadSetPartResponseTypeDef
- ActivateReadSetFilterTypeDef
- ExportReadSetFilterTypeDef
- ImportReadSetFilterTypeDef
- ImportReferenceFilterTypeDef
- ReadSetFilterTypeDef
- ReadSetUploadPartListFilterTypeDef
- ReferenceFilterTypeDef
- ReferenceStoreFilterTypeDef
- SequenceStoreFilterTypeDef
- ListReadSetActivationJobsResponseTypeDef
- GetReadSetActivationJobResponseTypeDef
- ListAnnotationImportJobsResponseTypeDef
- CreateVariantStoreResponseTypeDef
- UpdateVariantStoreResponseTypeDef
- AnnotationStoreItemTypeDef
- CreateReferenceStoreRequestRequestTypeDef
- CreateReferenceStoreResponseTypeDef
- CreateSequenceStoreRequestRequestTypeDef
- CreateSequenceStoreResponseTypeDef
- CreateVariantStoreRequestRequestTypeDef
- GetReferenceStoreResponseTypeDef
- GetVariantStoreResponseTypeDef
- ReferenceStoreDetailTypeDef
- SequenceStoreDetailTypeDef
- VariantStoreItemTypeDef
- ListAnnotationStoreVersionsResponseTypeDef
- BatchDeleteReadSetResponseTypeDef
- UploadReadSetPartRequestRequestTypeDef
- CompleteMultipartReadSetUploadRequestRequestTypeDef
- CreateWorkflowRequestRequestTypeDef
- GetWorkflowResponseTypeDef
- DeleteAnnotationStoreVersionsResponseTypeDef
- GetReadSetExportJobResponseTypeDef
- ListReadSetExportJobsResponseTypeDef
- StartReadSetExportJobRequestRequestTypeDef
- FileInformationTypeDef
- ListSharesRequestRequestTypeDef
- GetAnnotationImportRequestAnnotationImportJobCreatedWaitTypeDef
- GetAnnotationStoreRequestAnnotationStoreCreatedWaitTypeDef
- GetAnnotationStoreRequestAnnotationStoreDeletedWaitTypeDef
- GetAnnotationStoreVersionRequestAnnotationStoreVersionCreatedWaitTypeDef
- GetAnnotationStoreVersionRequestAnnotationStoreVersionDeletedWaitTypeDef
- GetReadSetActivationJobRequestReadSetActivationJobCompletedWaitTypeDef
- GetReadSetExportJobRequestReadSetExportJobCompletedWaitTypeDef
- GetReadSetImportJobRequestReadSetImportJobCompletedWaitTypeDef
- GetReferenceImportJobRequestReferenceImportJobCompletedWaitTypeDef
- GetRunRequestRunCompletedWaitTypeDef
- GetRunRequestRunRunningWaitTypeDef
- GetRunTaskRequestTaskCompletedWaitTypeDef
- GetRunTaskRequestTaskRunningWaitTypeDef
- GetVariantImportRequestVariantImportJobCreatedWaitTypeDef
- GetVariantStoreRequestVariantStoreCreatedWaitTypeDef
- GetVariantStoreRequestVariantStoreDeletedWaitTypeDef
- GetWorkflowRequestWorkflowActiveWaitTypeDef
- ReadSetListItemTypeDef
- GetReferenceImportJobResponseTypeDef
- GetRunResponseTypeDef
- GetSequenceStoreResponseTypeDef
- GetShareResponseTypeDef
- ListSharesResponseTypeDef
- GetVariantImportResponseTypeDef
- ListReadSetImportJobsResponseTypeDef
- ImportReadSetSourceItemTypeDef
- StartReadSetImportJobSourceItemTypeDef
- ListReferenceImportJobsResponseTypeDef
- ListAnnotationImportJobsRequestRequestTypeDef
- ListAnnotationImportJobsRequestListAnnotationImportJobsPaginateTypeDef
- ListMultipartReadSetUploadsRequestListMultipartReadSetUploadsPaginateTypeDef
- ListRunCachesRequestListRunCachesPaginateTypeDef
- ListRunGroupsRequestListRunGroupsPaginateTypeDef
- ListRunTasksRequestListRunTasksPaginateTypeDef
- ListRunsRequestListRunsPaginateTypeDef
- ListSharesRequestListSharesPaginateTypeDef
- ListWorkflowsRequestListWorkflowsPaginateTypeDef
- ListAnnotationStoreVersionsRequestListAnnotationStoreVersionsPaginateTypeDef
- ListAnnotationStoreVersionsRequestRequestTypeDef
- ListAnnotationStoresRequestListAnnotationStoresPaginateTypeDef
- ListAnnotationStoresRequestRequestTypeDef
- ListMultipartReadSetUploadsResponseTypeDef
- ListReadSetUploadPartsResponseTypeDef
- ListReferencesResponseTypeDef
- ListRunCachesResponseTypeDef
- ListRunGroupsResponseTypeDef
- ListRunTasksResponseTypeDef
- ListRunsResponseTypeDef
- ListVariantImportJobsRequestListVariantImportJobsPaginateTypeDef
- ListVariantImportJobsRequestRequestTypeDef
- ListVariantImportJobsResponseTypeDef
- ListVariantStoresRequestListVariantStoresPaginateTypeDef
- ListVariantStoresRequestRequestTypeDef
- ListWorkflowsResponseTypeDef
- TsvOptionsTypeDef
- StartReadSetActivationJobRequestRequestTypeDef
- StartReferenceImportJobRequestRequestTypeDef
- StartVariantImportRequestRequestTypeDef
- StoreOptionsOutputTypeDef
- TsvStoreOptionsUnionTypeDef
- VersionOptionsOutputTypeDef
- TsvVersionOptionsUnionTypeDef
- ListReadSetActivationJobsRequestListReadSetActivationJobsPaginateTypeDef
- ListReadSetActivationJobsRequestRequestTypeDef
- ListReadSetExportJobsRequestListReadSetExportJobsPaginateTypeDef
- ListReadSetExportJobsRequestRequestTypeDef
- ListReadSetImportJobsRequestListReadSetImportJobsPaginateTypeDef
- ListReadSetImportJobsRequestRequestTypeDef
- ListReferenceImportJobsRequestListReferenceImportJobsPaginateTypeDef
- ListReferenceImportJobsRequestRequestTypeDef
- ListReadSetsRequestListReadSetsPaginateTypeDef
- ListReadSetsRequestRequestTypeDef
- ListReadSetUploadPartsRequestListReadSetUploadPartsPaginateTypeDef
- ListReadSetUploadPartsRequestRequestTypeDef
- ListReferencesRequestListReferencesPaginateTypeDef
- ListReferencesRequestRequestTypeDef
- ListReferenceStoresRequestListReferenceStoresPaginateTypeDef
- ListReferenceStoresRequestRequestTypeDef
- ListSequenceStoresRequestListSequenceStoresPaginateTypeDef
- ListSequenceStoresRequestRequestTypeDef
- ListAnnotationStoresResponseTypeDef
- ListReferenceStoresResponseTypeDef
- ListSequenceStoresResponseTypeDef
- ListVariantStoresResponseTypeDef
- ReadSetFilesTypeDef
- ReferenceFilesTypeDef
- ListReadSetsResponseTypeDef
- GetReadSetImportJobResponseTypeDef
- StartReadSetImportJobRequestRequestTypeDef
- FormatOptionsTypeDef
- CreateAnnotationStoreResponseTypeDef
- GetAnnotationStoreResponseTypeDef
- UpdateAnnotationStoreResponseTypeDef
- StoreOptionsTypeDef
- CreateAnnotationStoreVersionResponseTypeDef
- GetAnnotationStoreVersionResponseTypeDef
- VersionOptionsTypeDef
- GetReadSetMetadataResponseTypeDef
- GetReferenceMetadataResponseTypeDef
- GetAnnotationImportResponseTypeDef
- StartAnnotationImportRequestRequestTypeDef
- CreateAnnotationStoreRequestRequestTypeDef
- CreateAnnotationStoreVersionRequestRequestTypeDef