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OmicsClient#

Index > Omics > OmicsClient

Auto-generated documentation for Omics type annotations stubs module mypy-boto3-omics.

OmicsClient#

Type annotations and code completion for boto3.client("omics"). boto3 documentation

# OmicsClient usage example

from boto3.session import Session
from mypy_boto3_omics.client import OmicsClient

def get_omics_client() -> OmicsClient:
    return Session().client("omics")

Exceptions#

boto3 client exceptions are generated in runtime. This class provides code completion for boto3.client("omics").exceptions structure.

# Exceptions.exceptions usage example

client = boto3.client("omics")

try:
    do_something(client)
except (
    client.exceptions.AccessDeniedException,
    client.exceptions.ClientError,
    client.exceptions.ConflictException,
    client.exceptions.InternalServerException,
    client.exceptions.NotSupportedOperationException,
    client.exceptions.RangeNotSatisfiableException,
    client.exceptions.RequestTimeoutException,
    client.exceptions.ResourceNotFoundException,
    client.exceptions.ServiceQuotaExceededException,
    client.exceptions.ThrottlingException,
    client.exceptions.ValidationException,
) as e:
    print(e)
# Exceptions.exceptions type checking example

from mypy_boto3_omics.client import Exceptions

def handle_error(exc: Exceptions.AccessDeniedException) -> None:
    ...

Methods#

can_paginate#

Type annotations and code completion for boto3.client("omics").can_paginate method. boto3 documentation

# can_paginate method definition

def can_paginate(
    self,
    operation_name: str,
) -> bool:
    ...

generate_presigned_url#

Type annotations and code completion for boto3.client("omics").generate_presigned_url method. boto3 documentation

# generate_presigned_url method definition

def generate_presigned_url(
    self,
    ClientMethod: str,
    Params: Mapping[str, Any] = ...,
    ExpiresIn: int = 3600,
    HttpMethod: str = ...,
) -> str:
    ...

abort_multipart_read_set_upload#

Stops a multipart read set upload into a sequence store and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").abort_multipart_read_set_upload method. boto3 documentation

# abort_multipart_read_set_upload method definition

def abort_multipart_read_set_upload(
    self,
    *,
    sequenceStoreId: str,
    uploadId: str,
) -> Dict[str, Any]:
    ...
# abort_multipart_read_set_upload method usage example with argument unpacking

kwargs: AbortMultipartReadSetUploadRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "uploadId": ...,
}

parent.abort_multipart_read_set_upload(**kwargs)
  1. See AbortMultipartReadSetUploadRequestTypeDef

accept_share#

Accept a resource share request.

Type annotations and code completion for boto3.client("omics").accept_share method. boto3 documentation

# accept_share method definition

def accept_share(
    self,
    *,
    shareId: str,
) -> AcceptShareResponseTypeDef:  # (1)
    ...
  1. See AcceptShareResponseTypeDef
# accept_share method usage example with argument unpacking

kwargs: AcceptShareRequestTypeDef = {  # (1)
    "shareId": ...,
}

parent.accept_share(**kwargs)
  1. See AcceptShareRequestTypeDef

batch_delete_read_set#

Deletes one or more read sets.

Type annotations and code completion for boto3.client("omics").batch_delete_read_set method. boto3 documentation

# batch_delete_read_set method definition

def batch_delete_read_set(
    self,
    *,
    ids: Sequence[str],
    sequenceStoreId: str,
) -> BatchDeleteReadSetResponseTypeDef:  # (1)
    ...
  1. See BatchDeleteReadSetResponseTypeDef
# batch_delete_read_set method usage example with argument unpacking

kwargs: BatchDeleteReadSetRequestTypeDef = {  # (1)
    "ids": ...,
    "sequenceStoreId": ...,
}

parent.batch_delete_read_set(**kwargs)
  1. See BatchDeleteReadSetRequestTypeDef

cancel_annotation_import_job#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").cancel_annotation_import_job method. boto3 documentation

# cancel_annotation_import_job method definition

def cancel_annotation_import_job(
    self,
    *,
    jobId: str,
) -> Dict[str, Any]:
    ...
# cancel_annotation_import_job method usage example with argument unpacking

kwargs: CancelAnnotationImportRequestTypeDef = {  # (1)
    "jobId": ...,
}

parent.cancel_annotation_import_job(**kwargs)
  1. See CancelAnnotationImportRequestTypeDef

cancel_run#

Cancels a run using its ID and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").cancel_run method. boto3 documentation

# cancel_run method definition

def cancel_run(
    self,
    *,
    id: str,
) -> EmptyResponseMetadataTypeDef:  # (1)
    ...
  1. See EmptyResponseMetadataTypeDef
# cancel_run method usage example with argument unpacking

kwargs: CancelRunRequestTypeDef = {  # (1)
    "id": ...,
}

parent.cancel_run(**kwargs)
  1. See CancelRunRequestTypeDef

cancel_variant_import_job#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").cancel_variant_import_job method. boto3 documentation

# cancel_variant_import_job method definition

def cancel_variant_import_job(
    self,
    *,
    jobId: str,
) -> Dict[str, Any]:
    ...
# cancel_variant_import_job method usage example with argument unpacking

kwargs: CancelVariantImportRequestTypeDef = {  # (1)
    "jobId": ...,
}

parent.cancel_variant_import_job(**kwargs)
  1. See CancelVariantImportRequestTypeDef

complete_multipart_read_set_upload#

Completes a multipart read set upload into a sequence store after you have initiated the upload process with CreateMultipartReadSetUpload and uploaded all read set parts using UploadReadSetPart.

Type annotations and code completion for boto3.client("omics").complete_multipart_read_set_upload method. boto3 documentation

# complete_multipart_read_set_upload method definition

def complete_multipart_read_set_upload(
    self,
    *,
    sequenceStoreId: str,
    uploadId: str,
    parts: Sequence[CompleteReadSetUploadPartListItemTypeDef],  # (1)
) -> CompleteMultipartReadSetUploadResponseTypeDef:  # (2)
    ...
  1. See Sequence[CompleteReadSetUploadPartListItemTypeDef]
  2. See CompleteMultipartReadSetUploadResponseTypeDef
# complete_multipart_read_set_upload method usage example with argument unpacking

kwargs: CompleteMultipartReadSetUploadRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "uploadId": ...,
    "parts": ...,
}

parent.complete_multipart_read_set_upload(**kwargs)
  1. See CompleteMultipartReadSetUploadRequestTypeDef

create_annotation_store#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").create_annotation_store method. boto3 documentation

# create_annotation_store method definition

def create_annotation_store(
    self,
    *,
    storeFormat: StoreFormatType,  # (1)
    reference: ReferenceItemTypeDef = ...,  # (2)
    name: str = ...,
    description: str = ...,
    tags: Mapping[str, str] = ...,
    versionName: str = ...,
    sseConfig: SseConfigTypeDef = ...,  # (3)
    storeOptions: StoreOptionsUnionTypeDef = ...,  # (4)
) -> CreateAnnotationStoreResponseTypeDef:  # (5)
    ...
  1. See StoreFormatType
  2. See ReferenceItemTypeDef
  3. See SseConfigTypeDef
  4. See StoreOptionsUnionTypeDef
  5. See CreateAnnotationStoreResponseTypeDef
# create_annotation_store method usage example with argument unpacking

kwargs: CreateAnnotationStoreRequestTypeDef = {  # (1)
    "storeFormat": ...,
}

parent.create_annotation_store(**kwargs)
  1. See CreateAnnotationStoreRequestTypeDef

create_annotation_store_version#

Creates a new version of an annotation store.

Type annotations and code completion for boto3.client("omics").create_annotation_store_version method. boto3 documentation

# create_annotation_store_version method definition

def create_annotation_store_version(
    self,
    *,
    name: str,
    versionName: str,
    description: str = ...,
    versionOptions: VersionOptionsUnionTypeDef = ...,  # (1)
    tags: Mapping[str, str] = ...,
) -> CreateAnnotationStoreVersionResponseTypeDef:  # (2)
    ...
  1. See VersionOptionsUnionTypeDef
  2. See CreateAnnotationStoreVersionResponseTypeDef
# create_annotation_store_version method usage example with argument unpacking

kwargs: CreateAnnotationStoreVersionRequestTypeDef = {  # (1)
    "name": ...,
    "versionName": ...,
}

parent.create_annotation_store_version(**kwargs)
  1. See CreateAnnotationStoreVersionRequestTypeDef

create_multipart_read_set_upload#

Initiates a multipart read set upload for uploading partitioned source files into a sequence store.

Type annotations and code completion for boto3.client("omics").create_multipart_read_set_upload method. boto3 documentation

# create_multipart_read_set_upload method definition

def create_multipart_read_set_upload(
    self,
    *,
    sequenceStoreId: str,
    sourceFileType: FileTypeType,  # (1)
    subjectId: str,
    sampleId: str,
    name: str,
    clientToken: str = ...,
    generatedFrom: str = ...,
    referenceArn: str = ...,
    description: str = ...,
    tags: Mapping[str, str] = ...,
) -> CreateMultipartReadSetUploadResponseTypeDef:  # (2)
    ...
  1. See FileTypeType
  2. See CreateMultipartReadSetUploadResponseTypeDef
# create_multipart_read_set_upload method usage example with argument unpacking

kwargs: CreateMultipartReadSetUploadRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "sourceFileType": ...,
    "subjectId": ...,
    "sampleId": ...,
    "name": ...,
}

parent.create_multipart_read_set_upload(**kwargs)
  1. See CreateMultipartReadSetUploadRequestTypeDef

create_reference_store#

Creates a reference store and returns metadata in JSON format.

Type annotations and code completion for boto3.client("omics").create_reference_store method. boto3 documentation

# create_reference_store method definition

def create_reference_store(
    self,
    *,
    name: str,
    description: str = ...,
    sseConfig: SseConfigTypeDef = ...,  # (1)
    tags: Mapping[str, str] = ...,
    clientToken: str = ...,
) -> CreateReferenceStoreResponseTypeDef:  # (2)
    ...
  1. See SseConfigTypeDef
  2. See CreateReferenceStoreResponseTypeDef
# create_reference_store method usage example with argument unpacking

kwargs: CreateReferenceStoreRequestTypeDef = {  # (1)
    "name": ...,
}

parent.create_reference_store(**kwargs)
  1. See CreateReferenceStoreRequestTypeDef

create_run_cache#

Creates a run cache to store and reference task outputs from completed private runs.

Type annotations and code completion for boto3.client("omics").create_run_cache method. boto3 documentation

# create_run_cache method definition

def create_run_cache(
    self,
    *,
    cacheS3Location: str,
    requestId: str,
    cacheBehavior: CacheBehaviorType = ...,  # (1)
    description: str = ...,
    name: str = ...,
    tags: Mapping[str, str] = ...,
    cacheBucketOwnerId: str = ...,
) -> CreateRunCacheResponseTypeDef:  # (2)
    ...
  1. See CacheBehaviorType
  2. See CreateRunCacheResponseTypeDef
# create_run_cache method usage example with argument unpacking

kwargs: CreateRunCacheRequestTypeDef = {  # (1)
    "cacheS3Location": ...,
    "requestId": ...,
}

parent.create_run_cache(**kwargs)
  1. See CreateRunCacheRequestTypeDef

create_run_group#

Creates a run group to limit the compute resources for the runs that are added to the group.

Type annotations and code completion for boto3.client("omics").create_run_group method. boto3 documentation

# create_run_group method definition

def create_run_group(
    self,
    *,
    requestId: str,
    name: str = ...,
    maxCpus: int = ...,
    maxRuns: int = ...,
    maxDuration: int = ...,
    tags: Mapping[str, str] = ...,
    maxGpus: int = ...,
) -> CreateRunGroupResponseTypeDef:  # (1)
    ...
  1. See CreateRunGroupResponseTypeDef
# create_run_group method usage example with argument unpacking

kwargs: CreateRunGroupRequestTypeDef = {  # (1)
    "requestId": ...,
}

parent.create_run_group(**kwargs)
  1. See CreateRunGroupRequestTypeDef

create_sequence_store#

Creates a sequence store and returns its metadata.

Type annotations and code completion for boto3.client("omics").create_sequence_store method. boto3 documentation

# create_sequence_store method definition

def create_sequence_store(
    self,
    *,
    name: str,
    description: str = ...,
    sseConfig: SseConfigTypeDef = ...,  # (1)
    tags: Mapping[str, str] = ...,
    clientToken: str = ...,
    fallbackLocation: str = ...,
    eTagAlgorithmFamily: ETagAlgorithmFamilyType = ...,  # (2)
    propagatedSetLevelTags: Sequence[str] = ...,
    s3AccessConfig: S3AccessConfigTypeDef = ...,  # (3)
) -> CreateSequenceStoreResponseTypeDef:  # (4)
    ...
  1. See SseConfigTypeDef
  2. See ETagAlgorithmFamilyType
  3. See S3AccessConfigTypeDef
  4. See CreateSequenceStoreResponseTypeDef
# create_sequence_store method usage example with argument unpacking

kwargs: CreateSequenceStoreRequestTypeDef = {  # (1)
    "name": ...,
}

parent.create_sequence_store(**kwargs)
  1. See CreateSequenceStoreRequestTypeDef

create_share#

Creates a cross-account shared resource.

Type annotations and code completion for boto3.client("omics").create_share method. boto3 documentation

# create_share method definition

def create_share(
    self,
    *,
    resourceArn: str,
    principalSubscriber: str,
    shareName: str = ...,
) -> CreateShareResponseTypeDef:  # (1)
    ...
  1. See CreateShareResponseTypeDef
# create_share method usage example with argument unpacking

kwargs: CreateShareRequestTypeDef = {  # (1)
    "resourceArn": ...,
    "principalSubscriber": ...,
}

parent.create_share(**kwargs)
  1. See CreateShareRequestTypeDef

create_variant_store#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").create_variant_store method. boto3 documentation

# create_variant_store method definition

def create_variant_store(
    self,
    *,
    reference: ReferenceItemTypeDef,  # (1)
    name: str = ...,
    description: str = ...,
    tags: Mapping[str, str] = ...,
    sseConfig: SseConfigTypeDef = ...,  # (2)
) -> CreateVariantStoreResponseTypeDef:  # (3)
    ...
  1. See ReferenceItemTypeDef
  2. See SseConfigTypeDef
  3. See CreateVariantStoreResponseTypeDef
# create_variant_store method usage example with argument unpacking

kwargs: CreateVariantStoreRequestTypeDef = {  # (1)
    "reference": ...,
}

parent.create_variant_store(**kwargs)
  1. See CreateVariantStoreRequestTypeDef

create_workflow#

Creates a private workflow.

Type annotations and code completion for boto3.client("omics").create_workflow method. boto3 documentation

# create_workflow method definition

def create_workflow(
    self,
    *,
    requestId: str,
    name: str = ...,
    description: str = ...,
    engine: WorkflowEngineType = ...,  # (1)
    definitionZip: BlobTypeDef = ...,
    definitionUri: str = ...,
    main: str = ...,
    parameterTemplate: Mapping[str, WorkflowParameterTypeDef] = ...,  # (2)
    storageCapacity: int = ...,
    tags: Mapping[str, str] = ...,
    accelerators: AcceleratorsType = ...,  # (3)
    storageType: StorageTypeType = ...,  # (4)
    containerRegistryMap: ContainerRegistryMapUnionTypeDef = ...,  # (5)
    containerRegistryMapUri: str = ...,
    readmeMarkdown: str = ...,
    parameterTemplatePath: str = ...,
    readmePath: str = ...,
    definitionRepository: DefinitionRepositoryTypeDef = ...,  # (6)
    workflowBucketOwnerId: str = ...,
    readmeUri: str = ...,
) -> CreateWorkflowResponseTypeDef:  # (7)
    ...
  1. See WorkflowEngineType
  2. See Mapping[str, WorkflowParameterTypeDef]
  3. See AcceleratorsType
  4. See StorageTypeType
  5. See ContainerRegistryMapUnionTypeDef
  6. See DefinitionRepositoryTypeDef
  7. See CreateWorkflowResponseTypeDef
# create_workflow method usage example with argument unpacking

kwargs: CreateWorkflowRequestTypeDef = {  # (1)
    "requestId": ...,
}

parent.create_workflow(**kwargs)
  1. See CreateWorkflowRequestTypeDef

create_workflow_version#

Creates a new workflow version for the workflow that you specify with the workflowId parameter.

Type annotations and code completion for boto3.client("omics").create_workflow_version method. boto3 documentation

# create_workflow_version method definition

def create_workflow_version(
    self,
    *,
    workflowId: str,
    versionName: str,
    requestId: str,
    definitionZip: BlobTypeDef = ...,
    definitionUri: str = ...,
    accelerators: AcceleratorsType = ...,  # (1)
    description: str = ...,
    engine: WorkflowEngineType = ...,  # (2)
    main: str = ...,
    parameterTemplate: Mapping[str, WorkflowParameterTypeDef] = ...,  # (3)
    storageType: StorageTypeType = ...,  # (4)
    storageCapacity: int = ...,
    tags: Mapping[str, str] = ...,
    workflowBucketOwnerId: str = ...,
    containerRegistryMap: ContainerRegistryMapUnionTypeDef = ...,  # (5)
    containerRegistryMapUri: str = ...,
    readmeMarkdown: str = ...,
    parameterTemplatePath: str = ...,
    readmePath: str = ...,
    definitionRepository: DefinitionRepositoryTypeDef = ...,  # (6)
    readmeUri: str = ...,
) -> CreateWorkflowVersionResponseTypeDef:  # (7)
    ...
  1. See AcceleratorsType
  2. See WorkflowEngineType
  3. See Mapping[str, WorkflowParameterTypeDef]
  4. See StorageTypeType
  5. See ContainerRegistryMapUnionTypeDef
  6. See DefinitionRepositoryTypeDef
  7. See CreateWorkflowVersionResponseTypeDef
# create_workflow_version method usage example with argument unpacking

kwargs: CreateWorkflowVersionRequestTypeDef = {  # (1)
    "workflowId": ...,
    "versionName": ...,
    "requestId": ...,
}

parent.create_workflow_version(**kwargs)
  1. See CreateWorkflowVersionRequestTypeDef

delete_annotation_store#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").delete_annotation_store method. boto3 documentation

# delete_annotation_store method definition

def delete_annotation_store(
    self,
    *,
    name: str,
    force: bool = ...,
) -> DeleteAnnotationStoreResponseTypeDef:  # (1)
    ...
  1. See DeleteAnnotationStoreResponseTypeDef
# delete_annotation_store method usage example with argument unpacking

kwargs: DeleteAnnotationStoreRequestTypeDef = {  # (1)
    "name": ...,
}

parent.delete_annotation_store(**kwargs)
  1. See DeleteAnnotationStoreRequestTypeDef

delete_annotation_store_versions#

Deletes one or multiple versions of an annotation store.

Type annotations and code completion for boto3.client("omics").delete_annotation_store_versions method. boto3 documentation

# delete_annotation_store_versions method definition

def delete_annotation_store_versions(
    self,
    *,
    name: str,
    versions: Sequence[str],
    force: bool = ...,
) -> DeleteAnnotationStoreVersionsResponseTypeDef:  # (1)
    ...
  1. See DeleteAnnotationStoreVersionsResponseTypeDef
# delete_annotation_store_versions method usage example with argument unpacking

kwargs: DeleteAnnotationStoreVersionsRequestTypeDef = {  # (1)
    "name": ...,
    "versions": ...,
}

parent.delete_annotation_store_versions(**kwargs)
  1. See DeleteAnnotationStoreVersionsRequestTypeDef

delete_reference#

Deletes a reference genome and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").delete_reference method. boto3 documentation

# delete_reference method definition

def delete_reference(
    self,
    *,
    id: str,
    referenceStoreId: str,
) -> Dict[str, Any]:
    ...
# delete_reference method usage example with argument unpacking

kwargs: DeleteReferenceRequestTypeDef = {  # (1)
    "id": ...,
    "referenceStoreId": ...,
}

parent.delete_reference(**kwargs)
  1. See DeleteReferenceRequestTypeDef

delete_reference_store#

Deletes a reference store and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").delete_reference_store method. boto3 documentation

# delete_reference_store method definition

def delete_reference_store(
    self,
    *,
    id: str,
) -> Dict[str, Any]:
    ...
# delete_reference_store method usage example with argument unpacking

kwargs: DeleteReferenceStoreRequestTypeDef = {  # (1)
    "id": ...,
}

parent.delete_reference_store(**kwargs)
  1. See DeleteReferenceStoreRequestTypeDef

delete_run#

Deletes a run and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").delete_run method. boto3 documentation

# delete_run method definition

def delete_run(
    self,
    *,
    id: str,
) -> EmptyResponseMetadataTypeDef:  # (1)
    ...
  1. See EmptyResponseMetadataTypeDef
# delete_run method usage example with argument unpacking

kwargs: DeleteRunRequestTypeDef = {  # (1)
    "id": ...,
}

parent.delete_run(**kwargs)
  1. See DeleteRunRequestTypeDef

delete_run_cache#

Deletes a run cache and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").delete_run_cache method. boto3 documentation

# delete_run_cache method definition

def delete_run_cache(
    self,
    *,
    id: str,
) -> EmptyResponseMetadataTypeDef:  # (1)
    ...
  1. See EmptyResponseMetadataTypeDef
# delete_run_cache method usage example with argument unpacking

kwargs: DeleteRunCacheRequestTypeDef = {  # (1)
    "id": ...,
}

parent.delete_run_cache(**kwargs)
  1. See DeleteRunCacheRequestTypeDef

delete_run_group#

Deletes a run group and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").delete_run_group method. boto3 documentation

# delete_run_group method definition

def delete_run_group(
    self,
    *,
    id: str,
) -> EmptyResponseMetadataTypeDef:  # (1)
    ...
  1. See EmptyResponseMetadataTypeDef
# delete_run_group method usage example with argument unpacking

kwargs: DeleteRunGroupRequestTypeDef = {  # (1)
    "id": ...,
}

parent.delete_run_group(**kwargs)
  1. See DeleteRunGroupRequestTypeDef

delete_s3_access_policy#

Deletes an access policy for the specified store.

Type annotations and code completion for boto3.client("omics").delete_s3_access_policy method. boto3 documentation

# delete_s3_access_policy method definition

def delete_s3_access_policy(
    self,
    *,
    s3AccessPointArn: str,
) -> Dict[str, Any]:
    ...
# delete_s3_access_policy method usage example with argument unpacking

kwargs: DeleteS3AccessPolicyRequestTypeDef = {  # (1)
    "s3AccessPointArn": ...,
}

parent.delete_s3_access_policy(**kwargs)
  1. See DeleteS3AccessPolicyRequestTypeDef

delete_sequence_store#

Deletes a sequence store and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").delete_sequence_store method. boto3 documentation

# delete_sequence_store method definition

def delete_sequence_store(
    self,
    *,
    id: str,
) -> Dict[str, Any]:
    ...
# delete_sequence_store method usage example with argument unpacking

kwargs: DeleteSequenceStoreRequestTypeDef = {  # (1)
    "id": ...,
}

parent.delete_sequence_store(**kwargs)
  1. See DeleteSequenceStoreRequestTypeDef

delete_share#

Deletes a resource share.

Type annotations and code completion for boto3.client("omics").delete_share method. boto3 documentation

# delete_share method definition

def delete_share(
    self,
    *,
    shareId: str,
) -> DeleteShareResponseTypeDef:  # (1)
    ...
  1. See DeleteShareResponseTypeDef
# delete_share method usage example with argument unpacking

kwargs: DeleteShareRequestTypeDef = {  # (1)
    "shareId": ...,
}

parent.delete_share(**kwargs)
  1. See DeleteShareRequestTypeDef

delete_variant_store#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").delete_variant_store method. boto3 documentation

# delete_variant_store method definition

def delete_variant_store(
    self,
    *,
    name: str,
    force: bool = ...,
) -> DeleteVariantStoreResponseTypeDef:  # (1)
    ...
  1. See DeleteVariantStoreResponseTypeDef
# delete_variant_store method usage example with argument unpacking

kwargs: DeleteVariantStoreRequestTypeDef = {  # (1)
    "name": ...,
}

parent.delete_variant_store(**kwargs)
  1. See DeleteVariantStoreRequestTypeDef

delete_workflow#

Deletes a workflow by specifying its ID.

Type annotations and code completion for boto3.client("omics").delete_workflow method. boto3 documentation

# delete_workflow method definition

def delete_workflow(
    self,
    *,
    id: str,
) -> EmptyResponseMetadataTypeDef:  # (1)
    ...
  1. See EmptyResponseMetadataTypeDef
# delete_workflow method usage example with argument unpacking

kwargs: DeleteWorkflowRequestTypeDef = {  # (1)
    "id": ...,
}

parent.delete_workflow(**kwargs)
  1. See DeleteWorkflowRequestTypeDef

delete_workflow_version#

Deletes a workflow version.

Type annotations and code completion for boto3.client("omics").delete_workflow_version method. boto3 documentation

# delete_workflow_version method definition

def delete_workflow_version(
    self,
    *,
    workflowId: str,
    versionName: str,
) -> EmptyResponseMetadataTypeDef:  # (1)
    ...
  1. See EmptyResponseMetadataTypeDef
# delete_workflow_version method usage example with argument unpacking

kwargs: DeleteWorkflowVersionRequestTypeDef = {  # (1)
    "workflowId": ...,
    "versionName": ...,
}

parent.delete_workflow_version(**kwargs)
  1. See DeleteWorkflowVersionRequestTypeDef

get_annotation_import_job#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").get_annotation_import_job method. boto3 documentation

# get_annotation_import_job method definition

def get_annotation_import_job(
    self,
    *,
    jobId: str,
) -> GetAnnotationImportResponseTypeDef:  # (1)
    ...
  1. See GetAnnotationImportResponseTypeDef
# get_annotation_import_job method usage example with argument unpacking

kwargs: GetAnnotationImportRequestTypeDef = {  # (1)
    "jobId": ...,
}

parent.get_annotation_import_job(**kwargs)
  1. See GetAnnotationImportRequestTypeDef

get_annotation_store#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").get_annotation_store method. boto3 documentation

# get_annotation_store method definition

def get_annotation_store(
    self,
    *,
    name: str,
) -> GetAnnotationStoreResponseTypeDef:  # (1)
    ...
  1. See GetAnnotationStoreResponseTypeDef
# get_annotation_store method usage example with argument unpacking

kwargs: GetAnnotationStoreRequestTypeDef = {  # (1)
    "name": ...,
}

parent.get_annotation_store(**kwargs)
  1. See GetAnnotationStoreRequestTypeDef

get_annotation_store_version#

Retrieves the metadata for an annotation store version.

Type annotations and code completion for boto3.client("omics").get_annotation_store_version method. boto3 documentation

# get_annotation_store_version method definition

def get_annotation_store_version(
    self,
    *,
    name: str,
    versionName: str,
) -> GetAnnotationStoreVersionResponseTypeDef:  # (1)
    ...
  1. See GetAnnotationStoreVersionResponseTypeDef
# get_annotation_store_version method usage example with argument unpacking

kwargs: GetAnnotationStoreVersionRequestTypeDef = {  # (1)
    "name": ...,
    "versionName": ...,
}

parent.get_annotation_store_version(**kwargs)
  1. See GetAnnotationStoreVersionRequestTypeDef

get_read_set#

Retrieves detailed information from parts of a read set and returns the read set in the same format that it was uploaded.

Type annotations and code completion for boto3.client("omics").get_read_set method. boto3 documentation

# get_read_set method definition

def get_read_set(
    self,
    *,
    id: str,
    sequenceStoreId: str,
    partNumber: int,
    file: ReadSetFileType = ...,  # (1)
) -> GetReadSetResponseTypeDef:  # (2)
    ...
  1. See ReadSetFileType
  2. See GetReadSetResponseTypeDef
# get_read_set method usage example with argument unpacking

kwargs: GetReadSetRequestTypeDef = {  # (1)
    "id": ...,
    "sequenceStoreId": ...,
    "partNumber": ...,
}

parent.get_read_set(**kwargs)
  1. See GetReadSetRequestTypeDef

get_read_set_activation_job#

Returns detailed information about the status of a read set activation job in JSON format.

Type annotations and code completion for boto3.client("omics").get_read_set_activation_job method. boto3 documentation

# get_read_set_activation_job method definition

def get_read_set_activation_job(
    self,
    *,
    id: str,
    sequenceStoreId: str,
) -> GetReadSetActivationJobResponseTypeDef:  # (1)
    ...
  1. See GetReadSetActivationJobResponseTypeDef
# get_read_set_activation_job method usage example with argument unpacking

kwargs: GetReadSetActivationJobRequestTypeDef = {  # (1)
    "id": ...,
    "sequenceStoreId": ...,
}

parent.get_read_set_activation_job(**kwargs)
  1. See GetReadSetActivationJobRequestTypeDef

get_read_set_export_job#

Retrieves status information about a read set export job and returns the data in JSON format.

Type annotations and code completion for boto3.client("omics").get_read_set_export_job method. boto3 documentation

# get_read_set_export_job method definition

def get_read_set_export_job(
    self,
    *,
    sequenceStoreId: str,
    id: str,
) -> GetReadSetExportJobResponseTypeDef:  # (1)
    ...
  1. See GetReadSetExportJobResponseTypeDef
# get_read_set_export_job method usage example with argument unpacking

kwargs: GetReadSetExportJobRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "id": ...,
}

parent.get_read_set_export_job(**kwargs)
  1. See GetReadSetExportJobRequestTypeDef

get_read_set_import_job#

Gets detailed and status information about a read set import job and returns the data in JSON format.

Type annotations and code completion for boto3.client("omics").get_read_set_import_job method. boto3 documentation

# get_read_set_import_job method definition

def get_read_set_import_job(
    self,
    *,
    id: str,
    sequenceStoreId: str,
) -> GetReadSetImportJobResponseTypeDef:  # (1)
    ...
  1. See GetReadSetImportJobResponseTypeDef
# get_read_set_import_job method usage example with argument unpacking

kwargs: GetReadSetImportJobRequestTypeDef = {  # (1)
    "id": ...,
    "sequenceStoreId": ...,
}

parent.get_read_set_import_job(**kwargs)
  1. See GetReadSetImportJobRequestTypeDef

get_read_set_metadata#

Retrieves the metadata for a read set from a sequence store in JSON format.

Type annotations and code completion for boto3.client("omics").get_read_set_metadata method. boto3 documentation

# get_read_set_metadata method definition

def get_read_set_metadata(
    self,
    *,
    id: str,
    sequenceStoreId: str,
) -> GetReadSetMetadataResponseTypeDef:  # (1)
    ...
  1. See GetReadSetMetadataResponseTypeDef
# get_read_set_metadata method usage example with argument unpacking

kwargs: GetReadSetMetadataRequestTypeDef = {  # (1)
    "id": ...,
    "sequenceStoreId": ...,
}

parent.get_read_set_metadata(**kwargs)
  1. See GetReadSetMetadataRequestTypeDef

get_reference#

Downloads parts of data from a reference genome and returns the reference file in the same format that it was uploaded.

Type annotations and code completion for boto3.client("omics").get_reference method. boto3 documentation

# get_reference method definition

def get_reference(
    self,
    *,
    id: str,
    referenceStoreId: str,
    partNumber: int,
    range: str = ...,
    file: ReferenceFileType = ...,  # (1)
) -> GetReferenceResponseTypeDef:  # (2)
    ...
  1. See ReferenceFileType
  2. See GetReferenceResponseTypeDef
# get_reference method usage example with argument unpacking

kwargs: GetReferenceRequestTypeDef = {  # (1)
    "id": ...,
    "referenceStoreId": ...,
    "partNumber": ...,
}

parent.get_reference(**kwargs)
  1. See GetReferenceRequestTypeDef

get_reference_import_job#

Monitors the status of a reference import job.

Type annotations and code completion for boto3.client("omics").get_reference_import_job method. boto3 documentation

# get_reference_import_job method definition

def get_reference_import_job(
    self,
    *,
    id: str,
    referenceStoreId: str,
) -> GetReferenceImportJobResponseTypeDef:  # (1)
    ...
  1. See GetReferenceImportJobResponseTypeDef
# get_reference_import_job method usage example with argument unpacking

kwargs: GetReferenceImportJobRequestTypeDef = {  # (1)
    "id": ...,
    "referenceStoreId": ...,
}

parent.get_reference_import_job(**kwargs)
  1. See GetReferenceImportJobRequestTypeDef

get_reference_metadata#

Retrieves metadata for a reference genome.

Type annotations and code completion for boto3.client("omics").get_reference_metadata method. boto3 documentation

# get_reference_metadata method definition

def get_reference_metadata(
    self,
    *,
    id: str,
    referenceStoreId: str,
) -> GetReferenceMetadataResponseTypeDef:  # (1)
    ...
  1. See GetReferenceMetadataResponseTypeDef
# get_reference_metadata method usage example with argument unpacking

kwargs: GetReferenceMetadataRequestTypeDef = {  # (1)
    "id": ...,
    "referenceStoreId": ...,
}

parent.get_reference_metadata(**kwargs)
  1. See GetReferenceMetadataRequestTypeDef

get_reference_store#

Gets information about a reference store.

Type annotations and code completion for boto3.client("omics").get_reference_store method. boto3 documentation

# get_reference_store method definition

def get_reference_store(
    self,
    *,
    id: str,
) -> GetReferenceStoreResponseTypeDef:  # (1)
    ...
  1. See GetReferenceStoreResponseTypeDef
# get_reference_store method usage example with argument unpacking

kwargs: GetReferenceStoreRequestTypeDef = {  # (1)
    "id": ...,
}

parent.get_reference_store(**kwargs)
  1. See GetReferenceStoreRequestTypeDef

get_run#

Gets detailed information about a specific run using its ID.

Type annotations and code completion for boto3.client("omics").get_run method. boto3 documentation

# get_run method definition

def get_run(
    self,
    *,
    id: str,
    export: Sequence[RunExportType] = ...,  # (1)
) -> GetRunResponseTypeDef:  # (2)
    ...
  1. See Sequence[Literal['DEFINITION']]
  2. See GetRunResponseTypeDef
# get_run method usage example with argument unpacking

kwargs: GetRunRequestTypeDef = {  # (1)
    "id": ...,
}

parent.get_run(**kwargs)
  1. See GetRunRequestTypeDef

get_run_cache#

Retrieves detailed information about the specified run cache using its ID.

Type annotations and code completion for boto3.client("omics").get_run_cache method. boto3 documentation

# get_run_cache method definition

def get_run_cache(
    self,
    *,
    id: str,
) -> GetRunCacheResponseTypeDef:  # (1)
    ...
  1. See GetRunCacheResponseTypeDef
# get_run_cache method usage example with argument unpacking

kwargs: GetRunCacheRequestTypeDef = {  # (1)
    "id": ...,
}

parent.get_run_cache(**kwargs)
  1. See GetRunCacheRequestTypeDef

get_run_group#

Gets information about a run group and returns its metadata.

Type annotations and code completion for boto3.client("omics").get_run_group method. boto3 documentation

# get_run_group method definition

def get_run_group(
    self,
    *,
    id: str,
) -> GetRunGroupResponseTypeDef:  # (1)
    ...
  1. See GetRunGroupResponseTypeDef
# get_run_group method usage example with argument unpacking

kwargs: GetRunGroupRequestTypeDef = {  # (1)
    "id": ...,
}

parent.get_run_group(**kwargs)
  1. See GetRunGroupRequestTypeDef

get_run_task#

Gets detailed information about a run task using its ID.

Type annotations and code completion for boto3.client("omics").get_run_task method. boto3 documentation

# get_run_task method definition

def get_run_task(
    self,
    *,
    id: str,
    taskId: str,
) -> GetRunTaskResponseTypeDef:  # (1)
    ...
  1. See GetRunTaskResponseTypeDef
# get_run_task method usage example with argument unpacking

kwargs: GetRunTaskRequestTypeDef = {  # (1)
    "id": ...,
    "taskId": ...,
}

parent.get_run_task(**kwargs)
  1. See GetRunTaskRequestTypeDef

get_s3_access_policy#

Retrieves details about an access policy on a given store.

Type annotations and code completion for boto3.client("omics").get_s3_access_policy method. boto3 documentation

# get_s3_access_policy method definition

def get_s3_access_policy(
    self,
    *,
    s3AccessPointArn: str,
) -> GetS3AccessPolicyResponseTypeDef:  # (1)
    ...
  1. See GetS3AccessPolicyResponseTypeDef
# get_s3_access_policy method usage example with argument unpacking

kwargs: GetS3AccessPolicyRequestTypeDef = {  # (1)
    "s3AccessPointArn": ...,
}

parent.get_s3_access_policy(**kwargs)
  1. See GetS3AccessPolicyRequestTypeDef

get_sequence_store#

Retrieves metadata for a sequence store using its ID and returns it in JSON format.

Type annotations and code completion for boto3.client("omics").get_sequence_store method. boto3 documentation

# get_sequence_store method definition

def get_sequence_store(
    self,
    *,
    id: str,
) -> GetSequenceStoreResponseTypeDef:  # (1)
    ...
  1. See GetSequenceStoreResponseTypeDef
# get_sequence_store method usage example with argument unpacking

kwargs: GetSequenceStoreRequestTypeDef = {  # (1)
    "id": ...,
}

parent.get_sequence_store(**kwargs)
  1. See GetSequenceStoreRequestTypeDef

get_share#

Retrieves the metadata for the specified resource share.

Type annotations and code completion for boto3.client("omics").get_share method. boto3 documentation

# get_share method definition

def get_share(
    self,
    *,
    shareId: str,
) -> GetShareResponseTypeDef:  # (1)
    ...
  1. See GetShareResponseTypeDef
# get_share method usage example with argument unpacking

kwargs: GetShareRequestTypeDef = {  # (1)
    "shareId": ...,
}

parent.get_share(**kwargs)
  1. See GetShareRequestTypeDef

get_variant_import_job#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").get_variant_import_job method. boto3 documentation

# get_variant_import_job method definition

def get_variant_import_job(
    self,
    *,
    jobId: str,
) -> GetVariantImportResponseTypeDef:  # (1)
    ...
  1. See GetVariantImportResponseTypeDef
# get_variant_import_job method usage example with argument unpacking

kwargs: GetVariantImportRequestTypeDef = {  # (1)
    "jobId": ...,
}

parent.get_variant_import_job(**kwargs)
  1. See GetVariantImportRequestTypeDef

get_variant_store#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").get_variant_store method. boto3 documentation

# get_variant_store method definition

def get_variant_store(
    self,
    *,
    name: str,
) -> GetVariantStoreResponseTypeDef:  # (1)
    ...
  1. See GetVariantStoreResponseTypeDef
# get_variant_store method usage example with argument unpacking

kwargs: GetVariantStoreRequestTypeDef = {  # (1)
    "name": ...,
}

parent.get_variant_store(**kwargs)
  1. See GetVariantStoreRequestTypeDef

get_workflow#

Gets all information about a workflow using its ID.

Type annotations and code completion for boto3.client("omics").get_workflow method. boto3 documentation

# get_workflow method definition

def get_workflow(
    self,
    *,
    id: str,
    type: WorkflowTypeType = ...,  # (1)
    export: Sequence[WorkflowExportType] = ...,  # (2)
    workflowOwnerId: str = ...,
) -> GetWorkflowResponseTypeDef:  # (3)
    ...
  1. See WorkflowTypeType
  2. See Sequence[WorkflowExportType]
  3. See GetWorkflowResponseTypeDef
# get_workflow method usage example with argument unpacking

kwargs: GetWorkflowRequestTypeDef = {  # (1)
    "id": ...,
}

parent.get_workflow(**kwargs)
  1. See GetWorkflowRequestTypeDef

get_workflow_version#

Gets information about a workflow version.

Type annotations and code completion for boto3.client("omics").get_workflow_version method. boto3 documentation

# get_workflow_version method definition

def get_workflow_version(
    self,
    *,
    workflowId: str,
    versionName: str,
    type: WorkflowTypeType = ...,  # (1)
    export: Sequence[WorkflowExportType] = ...,  # (2)
    workflowOwnerId: str = ...,
) -> GetWorkflowVersionResponseTypeDef:  # (3)
    ...
  1. See WorkflowTypeType
  2. See Sequence[WorkflowExportType]
  3. See GetWorkflowVersionResponseTypeDef
# get_workflow_version method usage example with argument unpacking

kwargs: GetWorkflowVersionRequestTypeDef = {  # (1)
    "workflowId": ...,
    "versionName": ...,
}

parent.get_workflow_version(**kwargs)
  1. See GetWorkflowVersionRequestTypeDef

list_annotation_import_jobs#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").list_annotation_import_jobs method. boto3 documentation

# list_annotation_import_jobs method definition

def list_annotation_import_jobs(
    self,
    *,
    maxResults: int = ...,
    ids: Sequence[str] = ...,
    nextToken: str = ...,
    filter: ListAnnotationImportJobsFilterTypeDef = ...,  # (1)
) -> ListAnnotationImportJobsResponseTypeDef:  # (2)
    ...
  1. See ListAnnotationImportJobsFilterTypeDef
  2. See ListAnnotationImportJobsResponseTypeDef
# list_annotation_import_jobs method usage example with argument unpacking

kwargs: ListAnnotationImportJobsRequestTypeDef = {  # (1)
    "maxResults": ...,
}

parent.list_annotation_import_jobs(**kwargs)
  1. See ListAnnotationImportJobsRequestTypeDef

list_annotation_store_versions#

Lists the versions of an annotation store.

Type annotations and code completion for boto3.client("omics").list_annotation_store_versions method. boto3 documentation

# list_annotation_store_versions method definition

def list_annotation_store_versions(
    self,
    *,
    name: str,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ListAnnotationStoreVersionsFilterTypeDef = ...,  # (1)
) -> ListAnnotationStoreVersionsResponseTypeDef:  # (2)
    ...
  1. See ListAnnotationStoreVersionsFilterTypeDef
  2. See ListAnnotationStoreVersionsResponseTypeDef
# list_annotation_store_versions method usage example with argument unpacking

kwargs: ListAnnotationStoreVersionsRequestTypeDef = {  # (1)
    "name": ...,
}

parent.list_annotation_store_versions(**kwargs)
  1. See ListAnnotationStoreVersionsRequestTypeDef

list_annotation_stores#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").list_annotation_stores method. boto3 documentation

# list_annotation_stores method definition

def list_annotation_stores(
    self,
    *,
    ids: Sequence[str] = ...,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ListAnnotationStoresFilterTypeDef = ...,  # (1)
) -> ListAnnotationStoresResponseTypeDef:  # (2)
    ...
  1. See ListAnnotationStoresFilterTypeDef
  2. See ListAnnotationStoresResponseTypeDef
# list_annotation_stores method usage example with argument unpacking

kwargs: ListAnnotationStoresRequestTypeDef = {  # (1)
    "ids": ...,
}

parent.list_annotation_stores(**kwargs)
  1. See ListAnnotationStoresRequestTypeDef

list_multipart_read_set_uploads#

Lists in-progress multipart read set uploads for a sequence store and returns it in a JSON formatted output.

Type annotations and code completion for boto3.client("omics").list_multipart_read_set_uploads method. boto3 documentation

# list_multipart_read_set_uploads method definition

def list_multipart_read_set_uploads(
    self,
    *,
    sequenceStoreId: str,
    maxResults: int = ...,
    nextToken: str = ...,
) -> ListMultipartReadSetUploadsResponseTypeDef:  # (1)
    ...
  1. See ListMultipartReadSetUploadsResponseTypeDef
# list_multipart_read_set_uploads method usage example with argument unpacking

kwargs: ListMultipartReadSetUploadsRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
}

parent.list_multipart_read_set_uploads(**kwargs)
  1. See ListMultipartReadSetUploadsRequestTypeDef

list_read_set_activation_jobs#

Retrieves a list of read set activation jobs and returns the metadata in a JSON formatted output.

Type annotations and code completion for boto3.client("omics").list_read_set_activation_jobs method. boto3 documentation

# list_read_set_activation_jobs method definition

def list_read_set_activation_jobs(
    self,
    *,
    sequenceStoreId: str,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ActivateReadSetFilterTypeDef = ...,  # (1)
) -> ListReadSetActivationJobsResponseTypeDef:  # (2)
    ...
  1. See ActivateReadSetFilterTypeDef
  2. See ListReadSetActivationJobsResponseTypeDef
# list_read_set_activation_jobs method usage example with argument unpacking

kwargs: ListReadSetActivationJobsRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
}

parent.list_read_set_activation_jobs(**kwargs)
  1. See ListReadSetActivationJobsRequestTypeDef

list_read_set_export_jobs#

Retrieves a list of read set export jobs in a JSON formatted response.

Type annotations and code completion for boto3.client("omics").list_read_set_export_jobs method. boto3 documentation

# list_read_set_export_jobs method definition

def list_read_set_export_jobs(
    self,
    *,
    sequenceStoreId: str,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ExportReadSetFilterTypeDef = ...,  # (1)
) -> ListReadSetExportJobsResponseTypeDef:  # (2)
    ...
  1. See ExportReadSetFilterTypeDef
  2. See ListReadSetExportJobsResponseTypeDef
# list_read_set_export_jobs method usage example with argument unpacking

kwargs: ListReadSetExportJobsRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
}

parent.list_read_set_export_jobs(**kwargs)
  1. See ListReadSetExportJobsRequestTypeDef

list_read_set_import_jobs#

Retrieves a list of read set import jobs and returns the data in JSON format.

Type annotations and code completion for boto3.client("omics").list_read_set_import_jobs method. boto3 documentation

# list_read_set_import_jobs method definition

def list_read_set_import_jobs(
    self,
    *,
    sequenceStoreId: str,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ImportReadSetFilterTypeDef = ...,  # (1)
) -> ListReadSetImportJobsResponseTypeDef:  # (2)
    ...
  1. See ImportReadSetFilterTypeDef
  2. See ListReadSetImportJobsResponseTypeDef
# list_read_set_import_jobs method usage example with argument unpacking

kwargs: ListReadSetImportJobsRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
}

parent.list_read_set_import_jobs(**kwargs)
  1. See ListReadSetImportJobsRequestTypeDef

list_read_set_upload_parts#

Lists all parts in a multipart read set upload for a sequence store and returns the metadata in a JSON formatted output.

Type annotations and code completion for boto3.client("omics").list_read_set_upload_parts method. boto3 documentation

# list_read_set_upload_parts method definition

def list_read_set_upload_parts(
    self,
    *,
    sequenceStoreId: str,
    uploadId: str,
    partSource: ReadSetPartSourceType,  # (1)
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ReadSetUploadPartListFilterTypeDef = ...,  # (2)
) -> ListReadSetUploadPartsResponseTypeDef:  # (3)
    ...
  1. See ReadSetPartSourceType
  2. See ReadSetUploadPartListFilterTypeDef
  3. See ListReadSetUploadPartsResponseTypeDef
# list_read_set_upload_parts method usage example with argument unpacking

kwargs: ListReadSetUploadPartsRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "uploadId": ...,
    "partSource": ...,
}

parent.list_read_set_upload_parts(**kwargs)
  1. See ListReadSetUploadPartsRequestTypeDef

list_read_sets#

Retrieves a list of read sets from a sequence store ID and returns the metadata in JSON format.

Type annotations and code completion for boto3.client("omics").list_read_sets method. boto3 documentation

# list_read_sets method definition

def list_read_sets(
    self,
    *,
    sequenceStoreId: str,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ReadSetFilterTypeDef = ...,  # (1)
) -> ListReadSetsResponseTypeDef:  # (2)
    ...
  1. See ReadSetFilterTypeDef
  2. See ListReadSetsResponseTypeDef
# list_read_sets method usage example with argument unpacking

kwargs: ListReadSetsRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
}

parent.list_read_sets(**kwargs)
  1. See ListReadSetsRequestTypeDef

list_reference_import_jobs#

Retrieves the metadata of one or more reference import jobs for a reference store.

Type annotations and code completion for boto3.client("omics").list_reference_import_jobs method. boto3 documentation

# list_reference_import_jobs method definition

def list_reference_import_jobs(
    self,
    *,
    referenceStoreId: str,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ImportReferenceFilterTypeDef = ...,  # (1)
) -> ListReferenceImportJobsResponseTypeDef:  # (2)
    ...
  1. See ImportReferenceFilterTypeDef
  2. See ListReferenceImportJobsResponseTypeDef
# list_reference_import_jobs method usage example with argument unpacking

kwargs: ListReferenceImportJobsRequestTypeDef = {  # (1)
    "referenceStoreId": ...,
}

parent.list_reference_import_jobs(**kwargs)
  1. See ListReferenceImportJobsRequestTypeDef

list_reference_stores#

Retrieves a list of reference stores linked to your account and returns their metadata in JSON format.

Type annotations and code completion for boto3.client("omics").list_reference_stores method. boto3 documentation

# list_reference_stores method definition

def list_reference_stores(
    self,
    *,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ReferenceStoreFilterTypeDef = ...,  # (1)
) -> ListReferenceStoresResponseTypeDef:  # (2)
    ...
  1. See ReferenceStoreFilterTypeDef
  2. See ListReferenceStoresResponseTypeDef
# list_reference_stores method usage example with argument unpacking

kwargs: ListReferenceStoresRequestTypeDef = {  # (1)
    "maxResults": ...,
}

parent.list_reference_stores(**kwargs)
  1. See ListReferenceStoresRequestTypeDef

list_references#

Retrieves the metadata of one or more reference genomes in a reference store.

Type annotations and code completion for boto3.client("omics").list_references method. boto3 documentation

# list_references method definition

def list_references(
    self,
    *,
    referenceStoreId: str,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: ReferenceFilterTypeDef = ...,  # (1)
) -> ListReferencesResponseTypeDef:  # (2)
    ...
  1. See ReferenceFilterTypeDef
  2. See ListReferencesResponseTypeDef
# list_references method usage example with argument unpacking

kwargs: ListReferencesRequestTypeDef = {  # (1)
    "referenceStoreId": ...,
}

parent.list_references(**kwargs)
  1. See ListReferencesRequestTypeDef

list_run_caches#

Retrieves a list of your run caches and the metadata for each cache.

Type annotations and code completion for boto3.client("omics").list_run_caches method. boto3 documentation

# list_run_caches method definition

def list_run_caches(
    self,
    *,
    maxResults: int = ...,
    startingToken: str = ...,
) -> ListRunCachesResponseTypeDef:  # (1)
    ...
  1. See ListRunCachesResponseTypeDef
# list_run_caches method usage example with argument unpacking

kwargs: ListRunCachesRequestTypeDef = {  # (1)
    "maxResults": ...,
}

parent.list_run_caches(**kwargs)
  1. See ListRunCachesRequestTypeDef

list_run_groups#

Retrieves a list of all run groups and returns the metadata for each run group.

Type annotations and code completion for boto3.client("omics").list_run_groups method. boto3 documentation

# list_run_groups method definition

def list_run_groups(
    self,
    *,
    name: str = ...,
    startingToken: str = ...,
    maxResults: int = ...,
) -> ListRunGroupsResponseTypeDef:  # (1)
    ...
  1. See ListRunGroupsResponseTypeDef
# list_run_groups method usage example with argument unpacking

kwargs: ListRunGroupsRequestTypeDef = {  # (1)
    "name": ...,
}

parent.list_run_groups(**kwargs)
  1. See ListRunGroupsRequestTypeDef

list_run_tasks#

Returns a list of tasks and status information within their specified run.

Type annotations and code completion for boto3.client("omics").list_run_tasks method. boto3 documentation

# list_run_tasks method definition

def list_run_tasks(
    self,
    *,
    id: str,
    status: TaskStatusType = ...,  # (1)
    startingToken: str = ...,
    maxResults: int = ...,
) -> ListRunTasksResponseTypeDef:  # (2)
    ...
  1. See TaskStatusType
  2. See ListRunTasksResponseTypeDef
# list_run_tasks method usage example with argument unpacking

kwargs: ListRunTasksRequestTypeDef = {  # (1)
    "id": ...,
}

parent.list_run_tasks(**kwargs)
  1. See ListRunTasksRequestTypeDef

list_runs#

Retrieves a list of runs and returns each run's metadata and status.

Type annotations and code completion for boto3.client("omics").list_runs method. boto3 documentation

# list_runs method definition

def list_runs(
    self,
    *,
    name: str = ...,
    runGroupId: str = ...,
    startingToken: str = ...,
    maxResults: int = ...,
    status: RunStatusType = ...,  # (1)
) -> ListRunsResponseTypeDef:  # (2)
    ...
  1. See RunStatusType
  2. See ListRunsResponseTypeDef
# list_runs method usage example with argument unpacking

kwargs: ListRunsRequestTypeDef = {  # (1)
    "name": ...,
}

parent.list_runs(**kwargs)
  1. See ListRunsRequestTypeDef

list_sequence_stores#

Retrieves a list of sequence stores and returns each sequence store's metadata.

Type annotations and code completion for boto3.client("omics").list_sequence_stores method. boto3 documentation

# list_sequence_stores method definition

def list_sequence_stores(
    self,
    *,
    maxResults: int = ...,
    nextToken: str = ...,
    filter: SequenceStoreFilterTypeDef = ...,  # (1)
) -> ListSequenceStoresResponseTypeDef:  # (2)
    ...
  1. See SequenceStoreFilterTypeDef
  2. See ListSequenceStoresResponseTypeDef
# list_sequence_stores method usage example with argument unpacking

kwargs: ListSequenceStoresRequestTypeDef = {  # (1)
    "maxResults": ...,
}

parent.list_sequence_stores(**kwargs)
  1. See ListSequenceStoresRequestTypeDef

list_shares#

Retrieves the resource shares associated with an account.

Type annotations and code completion for boto3.client("omics").list_shares method. boto3 documentation

# list_shares method definition

def list_shares(
    self,
    *,
    resourceOwner: ResourceOwnerType,  # (1)
    filter: FilterTypeDef = ...,  # (2)
    nextToken: str = ...,
    maxResults: int = ...,
) -> ListSharesResponseTypeDef:  # (3)
    ...
  1. See ResourceOwnerType
  2. See FilterTypeDef
  3. See ListSharesResponseTypeDef
# list_shares method usage example with argument unpacking

kwargs: ListSharesRequestTypeDef = {  # (1)
    "resourceOwner": ...,
}

parent.list_shares(**kwargs)
  1. See ListSharesRequestTypeDef

list_tags_for_resource#

Retrieves a list of tags for a resource.

Type annotations and code completion for boto3.client("omics").list_tags_for_resource method. boto3 documentation

# list_tags_for_resource method definition

def list_tags_for_resource(
    self,
    *,
    resourceArn: str,
) -> ListTagsForResourceResponseTypeDef:  # (1)
    ...
  1. See ListTagsForResourceResponseTypeDef
# list_tags_for_resource method usage example with argument unpacking

kwargs: ListTagsForResourceRequestTypeDef = {  # (1)
    "resourceArn": ...,
}

parent.list_tags_for_resource(**kwargs)
  1. See ListTagsForResourceRequestTypeDef

list_variant_import_jobs#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").list_variant_import_jobs method. boto3 documentation

# list_variant_import_jobs method definition

def list_variant_import_jobs(
    self,
    *,
    maxResults: int = ...,
    ids: Sequence[str] = ...,
    nextToken: str = ...,
    filter: ListVariantImportJobsFilterTypeDef = ...,  # (1)
) -> ListVariantImportJobsResponseTypeDef:  # (2)
    ...
  1. See ListVariantImportJobsFilterTypeDef
  2. See ListVariantImportJobsResponseTypeDef
# list_variant_import_jobs method usage example with argument unpacking

kwargs: ListVariantImportJobsRequestTypeDef = {  # (1)
    "maxResults": ...,
}

parent.list_variant_import_jobs(**kwargs)
  1. See ListVariantImportJobsRequestTypeDef

list_variant_stores#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").list_variant_stores method. boto3 documentation

# list_variant_stores method definition

def list_variant_stores(
    self,
    *,
    maxResults: int = ...,
    ids: Sequence[str] = ...,
    nextToken: str = ...,
    filter: ListVariantStoresFilterTypeDef = ...,  # (1)
) -> ListVariantStoresResponseTypeDef:  # (2)
    ...
  1. See ListVariantStoresFilterTypeDef
  2. See ListVariantStoresResponseTypeDef
# list_variant_stores method usage example with argument unpacking

kwargs: ListVariantStoresRequestTypeDef = {  # (1)
    "maxResults": ...,
}

parent.list_variant_stores(**kwargs)
  1. See ListVariantStoresRequestTypeDef

list_workflow_versions#

Lists the workflow versions for the specified workflow.

Type annotations and code completion for boto3.client("omics").list_workflow_versions method. boto3 documentation

# list_workflow_versions method definition

def list_workflow_versions(
    self,
    *,
    workflowId: str,
    type: WorkflowTypeType = ...,  # (1)
    workflowOwnerId: str = ...,
    startingToken: str = ...,
    maxResults: int = ...,
) -> ListWorkflowVersionsResponseTypeDef:  # (2)
    ...
  1. See WorkflowTypeType
  2. See ListWorkflowVersionsResponseTypeDef
# list_workflow_versions method usage example with argument unpacking

kwargs: ListWorkflowVersionsRequestTypeDef = {  # (1)
    "workflowId": ...,
}

parent.list_workflow_versions(**kwargs)
  1. See ListWorkflowVersionsRequestTypeDef

list_workflows#

Retrieves a list of existing workflows.

Type annotations and code completion for boto3.client("omics").list_workflows method. boto3 documentation

# list_workflows method definition

def list_workflows(
    self,
    *,
    type: WorkflowTypeType = ...,  # (1)
    name: str = ...,
    startingToken: str = ...,
    maxResults: int = ...,
) -> ListWorkflowsResponseTypeDef:  # (2)
    ...
  1. See WorkflowTypeType
  2. See ListWorkflowsResponseTypeDef
# list_workflows method usage example with argument unpacking

kwargs: ListWorkflowsRequestTypeDef = {  # (1)
    "type": ...,
}

parent.list_workflows(**kwargs)
  1. See ListWorkflowsRequestTypeDef

put_s3_access_policy#

Adds an access policy to the specified store.

Type annotations and code completion for boto3.client("omics").put_s3_access_policy method. boto3 documentation

# put_s3_access_policy method definition

def put_s3_access_policy(
    self,
    *,
    s3AccessPointArn: str,
    s3AccessPolicy: str,
) -> PutS3AccessPolicyResponseTypeDef:  # (1)
    ...
  1. See PutS3AccessPolicyResponseTypeDef
# put_s3_access_policy method usage example with argument unpacking

kwargs: PutS3AccessPolicyRequestTypeDef = {  # (1)
    "s3AccessPointArn": ...,
    "s3AccessPolicy": ...,
}

parent.put_s3_access_policy(**kwargs)
  1. See PutS3AccessPolicyRequestTypeDef

start_annotation_import_job#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").start_annotation_import_job method. boto3 documentation

# start_annotation_import_job method definition

def start_annotation_import_job(
    self,
    *,
    destinationName: str,
    roleArn: str,
    items: Sequence[AnnotationImportItemSourceTypeDef],  # (1)
    versionName: str = ...,
    formatOptions: FormatOptionsTypeDef = ...,  # (2)
    runLeftNormalization: bool = ...,
    annotationFields: Mapping[str, str] = ...,
) -> StartAnnotationImportResponseTypeDef:  # (3)
    ...
  1. See Sequence[AnnotationImportItemSourceTypeDef]
  2. See FormatOptionsTypeDef
  3. See StartAnnotationImportResponseTypeDef
# start_annotation_import_job method usage example with argument unpacking

kwargs: StartAnnotationImportRequestTypeDef = {  # (1)
    "destinationName": ...,
    "roleArn": ...,
    "items": ...,
}

parent.start_annotation_import_job(**kwargs)
  1. See StartAnnotationImportRequestTypeDef

start_read_set_activation_job#

Activates an archived read set and returns its metadata in a JSON formatted output.

Type annotations and code completion for boto3.client("omics").start_read_set_activation_job method. boto3 documentation

# start_read_set_activation_job method definition

def start_read_set_activation_job(
    self,
    *,
    sequenceStoreId: str,
    sources: Sequence[StartReadSetActivationJobSourceItemTypeDef],  # (1)
    clientToken: str = ...,
) -> StartReadSetActivationJobResponseTypeDef:  # (2)
    ...
  1. See Sequence[StartReadSetActivationJobSourceItemTypeDef]
  2. See StartReadSetActivationJobResponseTypeDef
# start_read_set_activation_job method usage example with argument unpacking

kwargs: StartReadSetActivationJobRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "sources": ...,
}

parent.start_read_set_activation_job(**kwargs)
  1. See StartReadSetActivationJobRequestTypeDef

start_read_set_export_job#

Starts a read set export job.

Type annotations and code completion for boto3.client("omics").start_read_set_export_job method. boto3 documentation

# start_read_set_export_job method definition

def start_read_set_export_job(
    self,
    *,
    sequenceStoreId: str,
    destination: str,
    roleArn: str,
    sources: Sequence[ExportReadSetTypeDef],  # (1)
    clientToken: str = ...,
) -> StartReadSetExportJobResponseTypeDef:  # (2)
    ...
  1. See Sequence[ExportReadSetTypeDef]
  2. See StartReadSetExportJobResponseTypeDef
# start_read_set_export_job method usage example with argument unpacking

kwargs: StartReadSetExportJobRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "destination": ...,
    "roleArn": ...,
    "sources": ...,
}

parent.start_read_set_export_job(**kwargs)
  1. See StartReadSetExportJobRequestTypeDef

start_read_set_import_job#

Imports a read set from the sequence store.

Type annotations and code completion for boto3.client("omics").start_read_set_import_job method. boto3 documentation

# start_read_set_import_job method definition

def start_read_set_import_job(
    self,
    *,
    sequenceStoreId: str,
    roleArn: str,
    sources: Sequence[StartReadSetImportJobSourceItemTypeDef],  # (1)
    clientToken: str = ...,
) -> StartReadSetImportJobResponseTypeDef:  # (2)
    ...
  1. See Sequence[StartReadSetImportJobSourceItemTypeDef]
  2. See StartReadSetImportJobResponseTypeDef
# start_read_set_import_job method usage example with argument unpacking

kwargs: StartReadSetImportJobRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "roleArn": ...,
    "sources": ...,
}

parent.start_read_set_import_job(**kwargs)
  1. See StartReadSetImportJobRequestTypeDef

start_reference_import_job#

Imports a reference genome from Amazon S3 into a specified reference store.

Type annotations and code completion for boto3.client("omics").start_reference_import_job method. boto3 documentation

# start_reference_import_job method definition

def start_reference_import_job(
    self,
    *,
    referenceStoreId: str,
    roleArn: str,
    sources: Sequence[StartReferenceImportJobSourceItemTypeDef],  # (1)
    clientToken: str = ...,
) -> StartReferenceImportJobResponseTypeDef:  # (2)
    ...
  1. See Sequence[StartReferenceImportJobSourceItemTypeDef]
  2. See StartReferenceImportJobResponseTypeDef
# start_reference_import_job method usage example with argument unpacking

kwargs: StartReferenceImportJobRequestTypeDef = {  # (1)
    "referenceStoreId": ...,
    "roleArn": ...,
    "sources": ...,
}

parent.start_reference_import_job(**kwargs)
  1. See StartReferenceImportJobRequestTypeDef

start_run#

Starts a new run and returns details about the run, or duplicates an existing run.

Type annotations and code completion for boto3.client("omics").start_run method. boto3 documentation

# start_run method definition

def start_run(
    self,
    *,
    roleArn: str,
    outputUri: str,
    requestId: str,
    workflowId: str = ...,
    workflowType: WorkflowTypeType = ...,  # (1)
    runId: str = ...,
    name: str = ...,
    cacheId: str = ...,
    cacheBehavior: CacheBehaviorType = ...,  # (2)
    runGroupId: str = ...,
    priority: int = ...,
    parameters: Mapping[str, Any] = ...,
    storageCapacity: int = ...,
    logLevel: RunLogLevelType = ...,  # (3)
    tags: Mapping[str, str] = ...,
    retentionMode: RunRetentionModeType = ...,  # (4)
    storageType: StorageTypeType = ...,  # (5)
    workflowOwnerId: str = ...,
    workflowVersionName: str = ...,
) -> StartRunResponseTypeDef:  # (6)
    ...
  1. See WorkflowTypeType
  2. See CacheBehaviorType
  3. See RunLogLevelType
  4. See RunRetentionModeType
  5. See StorageTypeType
  6. See StartRunResponseTypeDef
# start_run method usage example with argument unpacking

kwargs: StartRunRequestTypeDef = {  # (1)
    "roleArn": ...,
    "outputUri": ...,
    "requestId": ...,
}

parent.start_run(**kwargs)
  1. See StartRunRequestTypeDef

start_variant_import_job#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").start_variant_import_job method. boto3 documentation

# start_variant_import_job method definition

def start_variant_import_job(
    self,
    *,
    destinationName: str,
    roleArn: str,
    items: Sequence[VariantImportItemSourceTypeDef],  # (1)
    runLeftNormalization: bool = ...,
    annotationFields: Mapping[str, str] = ...,
) -> StartVariantImportResponseTypeDef:  # (2)
    ...
  1. See Sequence[VariantImportItemSourceTypeDef]
  2. See StartVariantImportResponseTypeDef
# start_variant_import_job method usage example with argument unpacking

kwargs: StartVariantImportRequestTypeDef = {  # (1)
    "destinationName": ...,
    "roleArn": ...,
    "items": ...,
}

parent.start_variant_import_job(**kwargs)
  1. See StartVariantImportRequestTypeDef

tag_resource#

Tags a resource.

Type annotations and code completion for boto3.client("omics").tag_resource method. boto3 documentation

# tag_resource method definition

def tag_resource(
    self,
    *,
    resourceArn: str,
    tags: Mapping[str, str],
) -> Dict[str, Any]:
    ...
# tag_resource method usage example with argument unpacking

kwargs: TagResourceRequestTypeDef = {  # (1)
    "resourceArn": ...,
    "tags": ...,
}

parent.tag_resource(**kwargs)
  1. See TagResourceRequestTypeDef

untag_resource#

Removes tags from a resource.

Type annotations and code completion for boto3.client("omics").untag_resource method. boto3 documentation

# untag_resource method definition

def untag_resource(
    self,
    *,
    resourceArn: str,
    tagKeys: Sequence[str],
) -> Dict[str, Any]:
    ...
# untag_resource method usage example with argument unpacking

kwargs: UntagResourceRequestTypeDef = {  # (1)
    "resourceArn": ...,
    "tagKeys": ...,
}

parent.untag_resource(**kwargs)
  1. See UntagResourceRequestTypeDef

update_annotation_store#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").update_annotation_store method. boto3 documentation

# update_annotation_store method definition

def update_annotation_store(
    self,
    *,
    name: str,
    description: str = ...,
) -> UpdateAnnotationStoreResponseTypeDef:  # (1)
    ...
  1. See UpdateAnnotationStoreResponseTypeDef
# update_annotation_store method usage example with argument unpacking

kwargs: UpdateAnnotationStoreRequestTypeDef = {  # (1)
    "name": ...,
}

parent.update_annotation_store(**kwargs)
  1. See UpdateAnnotationStoreRequestTypeDef

update_annotation_store_version#

Updates the description of an annotation store version.

Type annotations and code completion for boto3.client("omics").update_annotation_store_version method. boto3 documentation

# update_annotation_store_version method definition

def update_annotation_store_version(
    self,
    *,
    name: str,
    versionName: str,
    description: str = ...,
) -> UpdateAnnotationStoreVersionResponseTypeDef:  # (1)
    ...
  1. See UpdateAnnotationStoreVersionResponseTypeDef
# update_annotation_store_version method usage example with argument unpacking

kwargs: UpdateAnnotationStoreVersionRequestTypeDef = {  # (1)
    "name": ...,
    "versionName": ...,
}

parent.update_annotation_store_version(**kwargs)
  1. See UpdateAnnotationStoreVersionRequestTypeDef

update_run_cache#

Updates a run cache using its ID and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").update_run_cache method. boto3 documentation

# update_run_cache method definition

def update_run_cache(
    self,
    *,
    id: str,
    cacheBehavior: CacheBehaviorType = ...,  # (1)
    description: str = ...,
    name: str = ...,
) -> EmptyResponseMetadataTypeDef:  # (2)
    ...
  1. See CacheBehaviorType
  2. See EmptyResponseMetadataTypeDef
# update_run_cache method usage example with argument unpacking

kwargs: UpdateRunCacheRequestTypeDef = {  # (1)
    "id": ...,
}

parent.update_run_cache(**kwargs)
  1. See UpdateRunCacheRequestTypeDef

update_run_group#

Updates the settings of a run group and returns a response with no body if the operation is successful.

Type annotations and code completion for boto3.client("omics").update_run_group method. boto3 documentation

# update_run_group method definition

def update_run_group(
    self,
    *,
    id: str,
    name: str = ...,
    maxCpus: int = ...,
    maxRuns: int = ...,
    maxDuration: int = ...,
    maxGpus: int = ...,
) -> EmptyResponseMetadataTypeDef:  # (1)
    ...
  1. See EmptyResponseMetadataTypeDef
# update_run_group method usage example with argument unpacking

kwargs: UpdateRunGroupRequestTypeDef = {  # (1)
    "id": ...,
}

parent.update_run_group(**kwargs)
  1. See UpdateRunGroupRequestTypeDef

update_sequence_store#

Update one or more parameters for the sequence store.

Type annotations and code completion for boto3.client("omics").update_sequence_store method. boto3 documentation

# update_sequence_store method definition

def update_sequence_store(
    self,
    *,
    id: str,
    name: str = ...,
    description: str = ...,
    clientToken: str = ...,
    fallbackLocation: str = ...,
    propagatedSetLevelTags: Sequence[str] = ...,
    s3AccessConfig: S3AccessConfigTypeDef = ...,  # (1)
) -> UpdateSequenceStoreResponseTypeDef:  # (2)
    ...
  1. See S3AccessConfigTypeDef
  2. See UpdateSequenceStoreResponseTypeDef
# update_sequence_store method usage example with argument unpacking

kwargs: UpdateSequenceStoreRequestTypeDef = {  # (1)
    "id": ...,
}

parent.update_sequence_store(**kwargs)
  1. See UpdateSequenceStoreRequestTypeDef

update_variant_store#

Amazon Web Services HealthOmics variant stores and annotation stores will no longer be open to new customers starting November 7, 2025.

Type annotations and code completion for boto3.client("omics").update_variant_store method. boto3 documentation

# update_variant_store method definition

def update_variant_store(
    self,
    *,
    name: str,
    description: str = ...,
) -> UpdateVariantStoreResponseTypeDef:  # (1)
    ...
  1. See UpdateVariantStoreResponseTypeDef
# update_variant_store method usage example with argument unpacking

kwargs: UpdateVariantStoreRequestTypeDef = {  # (1)
    "name": ...,
}

parent.update_variant_store(**kwargs)
  1. See UpdateVariantStoreRequestTypeDef

update_workflow#

Updates information about a workflow.

Type annotations and code completion for boto3.client("omics").update_workflow method. boto3 documentation

# update_workflow method definition

def update_workflow(
    self,
    *,
    id: str,
    name: str = ...,
    description: str = ...,
    storageType: StorageTypeType = ...,  # (1)
    storageCapacity: int = ...,
    readmeMarkdown: str = ...,
) -> EmptyResponseMetadataTypeDef:  # (2)
    ...
  1. See StorageTypeType
  2. See EmptyResponseMetadataTypeDef
# update_workflow method usage example with argument unpacking

kwargs: UpdateWorkflowRequestTypeDef = {  # (1)
    "id": ...,
}

parent.update_workflow(**kwargs)
  1. See UpdateWorkflowRequestTypeDef

update_workflow_version#

Updates information about the workflow version.

Type annotations and code completion for boto3.client("omics").update_workflow_version method. boto3 documentation

# update_workflow_version method definition

def update_workflow_version(
    self,
    *,
    workflowId: str,
    versionName: str,
    description: str = ...,
    storageType: StorageTypeType = ...,  # (1)
    storageCapacity: int = ...,
    readmeMarkdown: str = ...,
) -> EmptyResponseMetadataTypeDef:  # (2)
    ...
  1. See StorageTypeType
  2. See EmptyResponseMetadataTypeDef
# update_workflow_version method usage example with argument unpacking

kwargs: UpdateWorkflowVersionRequestTypeDef = {  # (1)
    "workflowId": ...,
    "versionName": ...,
}

parent.update_workflow_version(**kwargs)
  1. See UpdateWorkflowVersionRequestTypeDef

upload_read_set_part#

Uploads a specific part of a read set into a sequence store.

Type annotations and code completion for boto3.client("omics").upload_read_set_part method. boto3 documentation

# upload_read_set_part method definition

def upload_read_set_part(
    self,
    *,
    sequenceStoreId: str,
    uploadId: str,
    partSource: ReadSetPartSourceType,  # (1)
    partNumber: int,
    payload: BlobTypeDef,
) -> UploadReadSetPartResponseTypeDef:  # (2)
    ...
  1. See ReadSetPartSourceType
  2. See UploadReadSetPartResponseTypeDef
# upload_read_set_part method usage example with argument unpacking

kwargs: UploadReadSetPartRequestTypeDef = {  # (1)
    "sequenceStoreId": ...,
    "uploadId": ...,
    "partSource": ...,
    "partNumber": ...,
    "payload": ...,
}

parent.upload_read_set_part(**kwargs)
  1. See UploadReadSetPartRequestTypeDef

get_paginator#

Type annotations and code completion for boto3.client("omics").get_paginator method with overloads.

get_waiter#

Type annotations and code completion for boto3.client("omics").get_waiter method with overloads.