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Type definitions#

Index > Omics > Type definitions

Auto-generated documentation for Omics type annotations stubs module mypy-boto3-omics.

TimestampTypeDef#

# TimestampTypeDef definition

TimestampTypeDef = Union[
    datetime,
    str,
]

BlobTypeDef#

# BlobTypeDef definition

BlobTypeDef = Union[
    str,
    bytes,
    IO[Any],
    StreamingBody,
]

AbortMultipartReadSetUploadRequestRequestTypeDef#

# AbortMultipartReadSetUploadRequestRequestTypeDef definition

class AbortMultipartReadSetUploadRequestRequestTypeDef(TypedDict):
    sequenceStoreId: str,
    uploadId: str,

AcceptShareRequestRequestTypeDef#

# AcceptShareRequestRequestTypeDef definition

class AcceptShareRequestRequestTypeDef(TypedDict):
    shareId: str,

ResponseMetadataTypeDef#

# ResponseMetadataTypeDef definition

class ResponseMetadataTypeDef(TypedDict):
    RequestId: str,
    HostId: str,
    HTTPStatusCode: int,
    HTTPHeaders: Dict[str, str],
    RetryAttempts: int,

ActivateReadSetJobItemTypeDef#

# ActivateReadSetJobItemTypeDef definition

class ActivateReadSetJobItemTypeDef(TypedDict):
    id: str,
    sequenceStoreId: str,
    status: ReadSetActivationJobStatusType,  # (1)
    creationTime: datetime,
    completionTime: NotRequired[datetime],
  1. See ReadSetActivationJobStatusType

ActivateReadSetSourceItemTypeDef#

# ActivateReadSetSourceItemTypeDef definition

class ActivateReadSetSourceItemTypeDef(TypedDict):
    readSetId: str,
    status: ReadSetActivationJobItemStatusType,  # (1)
    statusMessage: NotRequired[str],
  1. See ReadSetActivationJobItemStatusType

AnnotationImportItemDetailTypeDef#

# AnnotationImportItemDetailTypeDef definition

class AnnotationImportItemDetailTypeDef(TypedDict):
    source: str,
    jobStatus: JobStatusType,  # (1)
  1. See JobStatusType

AnnotationImportItemSourceTypeDef#

# AnnotationImportItemSourceTypeDef definition

class AnnotationImportItemSourceTypeDef(TypedDict):
    source: str,

AnnotationImportJobItemTypeDef#

# AnnotationImportJobItemTypeDef definition

class AnnotationImportJobItemTypeDef(TypedDict):
    id: str,
    destinationName: str,
    versionName: str,
    roleArn: str,
    status: JobStatusType,  # (1)
    creationTime: datetime,
    updateTime: datetime,
    completionTime: NotRequired[datetime],
    runLeftNormalization: NotRequired[bool],
    annotationFields: NotRequired[Dict[str, str]],
  1. See JobStatusType

ReferenceItemTypeDef#

# ReferenceItemTypeDef definition

class ReferenceItemTypeDef(TypedDict):
    referenceArn: NotRequired[str],

SseConfigTypeDef#

# SseConfigTypeDef definition

class SseConfigTypeDef(TypedDict):
    type: EncryptionTypeType,  # (1)
    keyArn: NotRequired[str],
  1. See EncryptionTypeType

AnnotationStoreVersionItemTypeDef#

# AnnotationStoreVersionItemTypeDef definition

class AnnotationStoreVersionItemTypeDef(TypedDict):
    storeId: str,
    id: str,
    status: VersionStatusType,  # (1)
    versionArn: str,
    name: str,
    versionName: str,
    description: str,
    creationTime: datetime,
    updateTime: datetime,
    statusMessage: str,
    versionSizeBytes: int,
  1. See VersionStatusType

BatchDeleteReadSetRequestRequestTypeDef#

# BatchDeleteReadSetRequestRequestTypeDef definition

class BatchDeleteReadSetRequestRequestTypeDef(TypedDict):
    ids: Sequence[str],
    sequenceStoreId: str,

ReadSetBatchErrorTypeDef#

# ReadSetBatchErrorTypeDef definition

class ReadSetBatchErrorTypeDef(TypedDict):
    id: str,
    code: str,
    message: str,

CancelAnnotationImportRequestRequestTypeDef#

# CancelAnnotationImportRequestRequestTypeDef definition

class CancelAnnotationImportRequestRequestTypeDef(TypedDict):
    jobId: str,

CancelRunRequestRequestTypeDef#

# CancelRunRequestRequestTypeDef definition

class CancelRunRequestRequestTypeDef(TypedDict):
    id: str,

CancelVariantImportRequestRequestTypeDef#

# CancelVariantImportRequestRequestTypeDef definition

class CancelVariantImportRequestRequestTypeDef(TypedDict):
    jobId: str,

CompleteReadSetUploadPartListItemTypeDef#

# CompleteReadSetUploadPartListItemTypeDef definition

class CompleteReadSetUploadPartListItemTypeDef(TypedDict):
    partNumber: int,
    partSource: ReadSetPartSourceType,  # (1)
    checksum: str,
  1. See ReadSetPartSourceType

CreateMultipartReadSetUploadRequestRequestTypeDef#

# CreateMultipartReadSetUploadRequestRequestTypeDef definition

class CreateMultipartReadSetUploadRequestRequestTypeDef(TypedDict):
    sequenceStoreId: str,
    sourceFileType: FileTypeType,  # (1)
    subjectId: str,
    sampleId: str,
    referenceArn: str,
    name: str,
    clientToken: NotRequired[str],
    generatedFrom: NotRequired[str],
    description: NotRequired[str],
    tags: NotRequired[Mapping[str, str]],
  1. See FileTypeType

CreateRunGroupRequestRequestTypeDef#

# CreateRunGroupRequestRequestTypeDef definition

class CreateRunGroupRequestRequestTypeDef(TypedDict):
    requestId: str,
    name: NotRequired[str],
    maxCpus: NotRequired[int],
    maxRuns: NotRequired[int],
    maxDuration: NotRequired[int],
    tags: NotRequired[Mapping[str, str]],
    maxGpus: NotRequired[int],

CreateShareRequestRequestTypeDef#

# CreateShareRequestRequestTypeDef definition

class CreateShareRequestRequestTypeDef(TypedDict):
    resourceArn: str,
    principalSubscriber: str,
    shareName: NotRequired[str],

WorkflowParameterTypeDef#

# WorkflowParameterTypeDef definition

class WorkflowParameterTypeDef(TypedDict):
    description: NotRequired[str],
    optional: NotRequired[bool],

DeleteAnnotationStoreRequestRequestTypeDef#

# DeleteAnnotationStoreRequestRequestTypeDef definition

class DeleteAnnotationStoreRequestRequestTypeDef(TypedDict):
    name: str,
    force: NotRequired[bool],

DeleteAnnotationStoreVersionsRequestRequestTypeDef#

# DeleteAnnotationStoreVersionsRequestRequestTypeDef definition

class DeleteAnnotationStoreVersionsRequestRequestTypeDef(TypedDict):
    name: str,
    versions: Sequence[str],
    force: NotRequired[bool],

VersionDeleteErrorTypeDef#

# VersionDeleteErrorTypeDef definition

class VersionDeleteErrorTypeDef(TypedDict):
    versionName: str,
    message: str,

DeleteReferenceRequestRequestTypeDef#

# DeleteReferenceRequestRequestTypeDef definition

class DeleteReferenceRequestRequestTypeDef(TypedDict):
    id: str,
    referenceStoreId: str,

DeleteReferenceStoreRequestRequestTypeDef#

# DeleteReferenceStoreRequestRequestTypeDef definition

class DeleteReferenceStoreRequestRequestTypeDef(TypedDict):
    id: str,

DeleteRunGroupRequestRequestTypeDef#

# DeleteRunGroupRequestRequestTypeDef definition

class DeleteRunGroupRequestRequestTypeDef(TypedDict):
    id: str,

DeleteRunRequestRequestTypeDef#

# DeleteRunRequestRequestTypeDef definition

class DeleteRunRequestRequestTypeDef(TypedDict):
    id: str,

DeleteSequenceStoreRequestRequestTypeDef#

# DeleteSequenceStoreRequestRequestTypeDef definition

class DeleteSequenceStoreRequestRequestTypeDef(TypedDict):
    id: str,

DeleteShareRequestRequestTypeDef#

# DeleteShareRequestRequestTypeDef definition

class DeleteShareRequestRequestTypeDef(TypedDict):
    shareId: str,

DeleteVariantStoreRequestRequestTypeDef#

# DeleteVariantStoreRequestRequestTypeDef definition

class DeleteVariantStoreRequestRequestTypeDef(TypedDict):
    name: str,
    force: NotRequired[bool],

DeleteWorkflowRequestRequestTypeDef#

# DeleteWorkflowRequestRequestTypeDef definition

class DeleteWorkflowRequestRequestTypeDef(TypedDict):
    id: str,

ExportReadSetDetailTypeDef#

# ExportReadSetDetailTypeDef definition

class ExportReadSetDetailTypeDef(TypedDict):
    id: str,
    status: ReadSetExportJobItemStatusType,  # (1)
    statusMessage: NotRequired[str],
  1. See ReadSetExportJobItemStatusType

ExportReadSetJobDetailTypeDef#

# ExportReadSetJobDetailTypeDef definition

class ExportReadSetJobDetailTypeDef(TypedDict):
    id: str,
    sequenceStoreId: str,
    destination: str,
    status: ReadSetExportJobStatusType,  # (1)
    creationTime: datetime,
    completionTime: NotRequired[datetime],
  1. See ReadSetExportJobStatusType

ExportReadSetTypeDef#

# ExportReadSetTypeDef definition

class ExportReadSetTypeDef(TypedDict):
    readSetId: str,

FileInformationTypeDef#

# FileInformationTypeDef definition

class FileInformationTypeDef(TypedDict):
    totalParts: NotRequired[int],
    partSize: NotRequired[int],
    contentLength: NotRequired[int],

FilterTypeDef#

# FilterTypeDef definition

class FilterTypeDef(TypedDict):
    resourceArns: NotRequired[Sequence[str]],
    status: NotRequired[Sequence[ShareStatusType]],  # (1)
  1. See ShareStatusType

VcfOptionsTypeDef#

# VcfOptionsTypeDef definition

class VcfOptionsTypeDef(TypedDict):
    ignoreQualField: NotRequired[bool],
    ignoreFilterField: NotRequired[bool],

WaiterConfigTypeDef#

# WaiterConfigTypeDef definition

class WaiterConfigTypeDef(TypedDict):
    Delay: NotRequired[int],
    MaxAttempts: NotRequired[int],

GetAnnotationImportRequestRequestTypeDef#

# GetAnnotationImportRequestRequestTypeDef definition

class GetAnnotationImportRequestRequestTypeDef(TypedDict):
    jobId: str,

GetAnnotationStoreRequestRequestTypeDef#

# GetAnnotationStoreRequestRequestTypeDef definition

class GetAnnotationStoreRequestRequestTypeDef(TypedDict):
    name: str,

GetAnnotationStoreVersionRequestRequestTypeDef#

# GetAnnotationStoreVersionRequestRequestTypeDef definition

class GetAnnotationStoreVersionRequestRequestTypeDef(TypedDict):
    name: str,
    versionName: str,

GetReadSetActivationJobRequestRequestTypeDef#

# GetReadSetActivationJobRequestRequestTypeDef definition

class GetReadSetActivationJobRequestRequestTypeDef(TypedDict):
    id: str,
    sequenceStoreId: str,

GetReadSetExportJobRequestRequestTypeDef#

# GetReadSetExportJobRequestRequestTypeDef definition

class GetReadSetExportJobRequestRequestTypeDef(TypedDict):
    sequenceStoreId: str,
    id: str,

GetReadSetImportJobRequestRequestTypeDef#

# GetReadSetImportJobRequestRequestTypeDef definition

class GetReadSetImportJobRequestRequestTypeDef(TypedDict):
    id: str,
    sequenceStoreId: str,

GetReadSetMetadataRequestRequestTypeDef#

# GetReadSetMetadataRequestRequestTypeDef definition

class GetReadSetMetadataRequestRequestTypeDef(TypedDict):
    id: str,
    sequenceStoreId: str,

SequenceInformationTypeDef#

# SequenceInformationTypeDef definition

class SequenceInformationTypeDef(TypedDict):
    totalReadCount: NotRequired[int],
    totalBaseCount: NotRequired[int],
    generatedFrom: NotRequired[str],
    alignment: NotRequired[str],

GetReadSetRequestRequestTypeDef#

# GetReadSetRequestRequestTypeDef definition

class GetReadSetRequestRequestTypeDef(TypedDict):
    id: str,
    sequenceStoreId: str,
    partNumber: int,
    file: NotRequired[ReadSetFileType],  # (1)
  1. See ReadSetFileType

GetReferenceImportJobRequestRequestTypeDef#

# GetReferenceImportJobRequestRequestTypeDef definition

class GetReferenceImportJobRequestRequestTypeDef(TypedDict):
    id: str,
    referenceStoreId: str,

ImportReferenceSourceItemTypeDef#

# ImportReferenceSourceItemTypeDef definition

class ImportReferenceSourceItemTypeDef(TypedDict):
    status: ReferenceImportJobItemStatusType,  # (1)
    sourceFile: NotRequired[str],
    statusMessage: NotRequired[str],
    name: NotRequired[str],
    description: NotRequired[str],
    tags: NotRequired[Dict[str, str]],
  1. See ReferenceImportJobItemStatusType

GetReferenceMetadataRequestRequestTypeDef#

# GetReferenceMetadataRequestRequestTypeDef definition

class GetReferenceMetadataRequestRequestTypeDef(TypedDict):
    id: str,
    referenceStoreId: str,

GetReferenceRequestRequestTypeDef#

# GetReferenceRequestRequestTypeDef definition

class GetReferenceRequestRequestTypeDef(TypedDict):
    id: str,
    referenceStoreId: str,
    partNumber: int,
    range: NotRequired[str],
    file: NotRequired[ReferenceFileType],  # (1)
  1. See ReferenceFileType

GetReferenceStoreRequestRequestTypeDef#

# GetReferenceStoreRequestRequestTypeDef definition

class GetReferenceStoreRequestRequestTypeDef(TypedDict):
    id: str,

GetRunGroupRequestRequestTypeDef#

# GetRunGroupRequestRequestTypeDef definition

class GetRunGroupRequestRequestTypeDef(TypedDict):
    id: str,

GetRunRequestRequestTypeDef#

# GetRunRequestRequestTypeDef definition

class GetRunRequestRequestTypeDef(TypedDict):
    id: str,
    export: NotRequired[Sequence[RunExportType]],  # (1)
  1. See RunExportType

GetRunTaskRequestRequestTypeDef#

# GetRunTaskRequestRequestTypeDef definition

class GetRunTaskRequestRequestTypeDef(TypedDict):
    id: str,
    taskId: str,

GetSequenceStoreRequestRequestTypeDef#

# GetSequenceStoreRequestRequestTypeDef definition

class GetSequenceStoreRequestRequestTypeDef(TypedDict):
    id: str,

GetShareRequestRequestTypeDef#

# GetShareRequestRequestTypeDef definition

class GetShareRequestRequestTypeDef(TypedDict):
    shareId: str,

ShareDetailsTypeDef#

# ShareDetailsTypeDef definition

class ShareDetailsTypeDef(TypedDict):
    shareId: NotRequired[str],
    resourceArn: NotRequired[str],
    principalSubscriber: NotRequired[str],
    ownerId: NotRequired[str],
    status: NotRequired[ShareStatusType],  # (1)
    statusMessage: NotRequired[str],
    shareName: NotRequired[str],
    creationTime: NotRequired[datetime],
    updateTime: NotRequired[datetime],
  1. See ShareStatusType

GetVariantImportRequestRequestTypeDef#

# GetVariantImportRequestRequestTypeDef definition

class GetVariantImportRequestRequestTypeDef(TypedDict):
    jobId: str,

VariantImportItemDetailTypeDef#

# VariantImportItemDetailTypeDef definition

class VariantImportItemDetailTypeDef(TypedDict):
    source: str,
    jobStatus: JobStatusType,  # (1)
    statusMessage: NotRequired[str],
  1. See JobStatusType

GetVariantStoreRequestRequestTypeDef#

# GetVariantStoreRequestRequestTypeDef definition

class GetVariantStoreRequestRequestTypeDef(TypedDict):
    name: str,

GetWorkflowRequestRequestTypeDef#

# GetWorkflowRequestRequestTypeDef definition

class GetWorkflowRequestRequestTypeDef(TypedDict):
    id: str,
    type: NotRequired[WorkflowTypeType],  # (1)
    export: NotRequired[Sequence[WorkflowExportType]],  # (2)
  1. See WorkflowTypeType
  2. See WorkflowExportType

ImportReadSetJobItemTypeDef#

# ImportReadSetJobItemTypeDef definition

class ImportReadSetJobItemTypeDef(TypedDict):
    id: str,
    sequenceStoreId: str,
    roleArn: str,
    status: ReadSetImportJobStatusType,  # (1)
    creationTime: datetime,
    completionTime: NotRequired[datetime],
  1. See ReadSetImportJobStatusType

SourceFilesTypeDef#

# SourceFilesTypeDef definition

class SourceFilesTypeDef(TypedDict):
    source1: str,
    source2: NotRequired[str],

ImportReferenceJobItemTypeDef#

# ImportReferenceJobItemTypeDef definition

class ImportReferenceJobItemTypeDef(TypedDict):
    id: str,
    referenceStoreId: str,
    roleArn: str,
    status: ReferenceImportJobStatusType,  # (1)
    creationTime: datetime,
    completionTime: NotRequired[datetime],
  1. See ReferenceImportJobStatusType

ListAnnotationImportJobsFilterTypeDef#

# ListAnnotationImportJobsFilterTypeDef definition

class ListAnnotationImportJobsFilterTypeDef(TypedDict):
    status: NotRequired[JobStatusType],  # (1)
    storeName: NotRequired[str],
  1. See JobStatusType

PaginatorConfigTypeDef#

# PaginatorConfigTypeDef definition

class PaginatorConfigTypeDef(TypedDict):
    MaxItems: NotRequired[int],
    PageSize: NotRequired[int],
    StartingToken: NotRequired[str],

ListAnnotationStoreVersionsFilterTypeDef#

# ListAnnotationStoreVersionsFilterTypeDef definition

class ListAnnotationStoreVersionsFilterTypeDef(TypedDict):
    status: NotRequired[VersionStatusType],  # (1)
  1. See VersionStatusType

ListAnnotationStoresFilterTypeDef#

# ListAnnotationStoresFilterTypeDef definition

class ListAnnotationStoresFilterTypeDef(TypedDict):
    status: NotRequired[StoreStatusType],  # (1)
  1. See StoreStatusType

ListMultipartReadSetUploadsRequestRequestTypeDef#

# ListMultipartReadSetUploadsRequestRequestTypeDef definition

class ListMultipartReadSetUploadsRequestRequestTypeDef(TypedDict):
    sequenceStoreId: str,
    maxResults: NotRequired[int],
    nextToken: NotRequired[str],

MultipartReadSetUploadListItemTypeDef#

# MultipartReadSetUploadListItemTypeDef definition

class MultipartReadSetUploadListItemTypeDef(TypedDict):
    sequenceStoreId: str,
    uploadId: str,
    sourceFileType: FileTypeType,  # (1)
    subjectId: str,
    sampleId: str,
    generatedFrom: str,
    referenceArn: str,
    creationTime: datetime,
    name: NotRequired[str],
    description: NotRequired[str],
    tags: NotRequired[Dict[str, str]],
  1. See FileTypeType

ReadSetUploadPartListItemTypeDef#

# ReadSetUploadPartListItemTypeDef definition

class ReadSetUploadPartListItemTypeDef(TypedDict):
    partNumber: int,
    partSize: int,
    partSource: ReadSetPartSourceType,  # (1)
    checksum: str,
    creationTime: NotRequired[datetime],
    lastUpdatedTime: NotRequired[datetime],
  1. See ReadSetPartSourceType

ReferenceListItemTypeDef#

# ReferenceListItemTypeDef definition

class ReferenceListItemTypeDef(TypedDict):
    id: str,
    arn: str,
    referenceStoreId: str,
    md5: str,
    creationTime: datetime,
    updateTime: datetime,
    status: NotRequired[ReferenceStatusType],  # (1)
    name: NotRequired[str],
    description: NotRequired[str],
  1. See ReferenceStatusType

ListRunGroupsRequestRequestTypeDef#

# ListRunGroupsRequestRequestTypeDef definition

class ListRunGroupsRequestRequestTypeDef(TypedDict):
    name: NotRequired[str],
    startingToken: NotRequired[str],
    maxResults: NotRequired[int],

RunGroupListItemTypeDef#

# RunGroupListItemTypeDef definition

class RunGroupListItemTypeDef(TypedDict):
    arn: NotRequired[str],
    id: NotRequired[str],
    name: NotRequired[str],
    maxCpus: NotRequired[int],
    maxRuns: NotRequired[int],
    maxDuration: NotRequired[int],
    creationTime: NotRequired[datetime],
    maxGpus: NotRequired[int],

ListRunTasksRequestRequestTypeDef#

# ListRunTasksRequestRequestTypeDef definition

class ListRunTasksRequestRequestTypeDef(TypedDict):
    id: str,
    status: NotRequired[TaskStatusType],  # (1)
    startingToken: NotRequired[str],
    maxResults: NotRequired[int],
  1. See TaskStatusType

TaskListItemTypeDef#

# TaskListItemTypeDef definition

class TaskListItemTypeDef(TypedDict):
    taskId: NotRequired[str],
    status: NotRequired[TaskStatusType],  # (1)
    name: NotRequired[str],
    cpus: NotRequired[int],
    memory: NotRequired[int],
    creationTime: NotRequired[datetime],
    startTime: NotRequired[datetime],
    stopTime: NotRequired[datetime],
    gpus: NotRequired[int],
    instanceType: NotRequired[str],
  1. See TaskStatusType

ListRunsRequestRequestTypeDef#

# ListRunsRequestRequestTypeDef definition

class ListRunsRequestRequestTypeDef(TypedDict):
    name: NotRequired[str],
    runGroupId: NotRequired[str],
    startingToken: NotRequired[str],
    maxResults: NotRequired[int],
    status: NotRequired[RunStatusType],  # (1)
  1. See RunStatusType

RunListItemTypeDef#

# RunListItemTypeDef definition

class RunListItemTypeDef(TypedDict):
    arn: NotRequired[str],
    id: NotRequired[str],
    status: NotRequired[RunStatusType],  # (1)
    workflowId: NotRequired[str],
    name: NotRequired[str],
    priority: NotRequired[int],
    storageCapacity: NotRequired[int],
    creationTime: NotRequired[datetime],
    startTime: NotRequired[datetime],
    stopTime: NotRequired[datetime],
  1. See RunStatusType

ListTagsForResourceRequestRequestTypeDef#

# ListTagsForResourceRequestRequestTypeDef definition

class ListTagsForResourceRequestRequestTypeDef(TypedDict):
    resourceArn: str,

ListVariantImportJobsFilterTypeDef#

# ListVariantImportJobsFilterTypeDef definition

class ListVariantImportJobsFilterTypeDef(TypedDict):
    status: NotRequired[JobStatusType],  # (1)
    storeName: NotRequired[str],
  1. See JobStatusType

VariantImportJobItemTypeDef#

# VariantImportJobItemTypeDef definition

class VariantImportJobItemTypeDef(TypedDict):
    id: str,
    destinationName: str,
    roleArn: str,
    status: JobStatusType,  # (1)
    creationTime: datetime,
    updateTime: datetime,
    completionTime: NotRequired[datetime],
    runLeftNormalization: NotRequired[bool],
    annotationFields: NotRequired[Dict[str, str]],
  1. See JobStatusType

ListVariantStoresFilterTypeDef#

# ListVariantStoresFilterTypeDef definition

class ListVariantStoresFilterTypeDef(TypedDict):
    status: NotRequired[StoreStatusType],  # (1)
  1. See StoreStatusType

ListWorkflowsRequestRequestTypeDef#

# ListWorkflowsRequestRequestTypeDef definition

class ListWorkflowsRequestRequestTypeDef(TypedDict):
    type: NotRequired[WorkflowTypeType],  # (1)
    name: NotRequired[str],
    startingToken: NotRequired[str],
    maxResults: NotRequired[int],
  1. See WorkflowTypeType

WorkflowListItemTypeDef#

# WorkflowListItemTypeDef definition

class WorkflowListItemTypeDef(TypedDict):
    arn: NotRequired[str],
    id: NotRequired[str],
    name: NotRequired[str],
    status: NotRequired[WorkflowStatusType],  # (1)
    type: NotRequired[WorkflowTypeType],  # (2)
    digest: NotRequired[str],
    creationTime: NotRequired[datetime],
    metadata: NotRequired[Dict[str, str]],
  1. See WorkflowStatusType
  2. See WorkflowTypeType

ReadOptionsTypeDef#

# ReadOptionsTypeDef definition

class ReadOptionsTypeDef(TypedDict):
    sep: NotRequired[str],
    encoding: NotRequired[str],
    quote: NotRequired[str],
    quoteAll: NotRequired[bool],
    escape: NotRequired[str],
    escapeQuotes: NotRequired[bool],
    comment: NotRequired[str],
    header: NotRequired[bool],
    lineSep: NotRequired[str],

StartReadSetActivationJobSourceItemTypeDef#

# StartReadSetActivationJobSourceItemTypeDef definition

class StartReadSetActivationJobSourceItemTypeDef(TypedDict):
    readSetId: str,

StartReferenceImportJobSourceItemTypeDef#

# StartReferenceImportJobSourceItemTypeDef definition

class StartReferenceImportJobSourceItemTypeDef(TypedDict):
    sourceFile: str,
    name: str,
    description: NotRequired[str],
    tags: NotRequired[Mapping[str, str]],

StartRunRequestRequestTypeDef#

# StartRunRequestRequestTypeDef definition

class StartRunRequestRequestTypeDef(TypedDict):
    roleArn: str,
    requestId: str,
    workflowId: NotRequired[str],
    workflowType: NotRequired[WorkflowTypeType],  # (1)
    runId: NotRequired[str],
    name: NotRequired[str],
    runGroupId: NotRequired[str],
    priority: NotRequired[int],
    parameters: NotRequired[Mapping[str, Any]],
    storageCapacity: NotRequired[int],
    outputUri: NotRequired[str],
    logLevel: NotRequired[RunLogLevelType],  # (2)
    tags: NotRequired[Mapping[str, str]],
    retentionMode: NotRequired[RunRetentionModeType],  # (3)
  1. See WorkflowTypeType
  2. See RunLogLevelType
  3. See RunRetentionModeType

VariantImportItemSourceTypeDef#

# VariantImportItemSourceTypeDef definition

class VariantImportItemSourceTypeDef(TypedDict):
    source: str,

TsvStoreOptionsTypeDef#

# TsvStoreOptionsTypeDef definition

class TsvStoreOptionsTypeDef(TypedDict):
    annotationType: NotRequired[AnnotationTypeType],  # (1)
    formatToHeader: NotRequired[Mapping[FormatToHeaderKeyType, str]],  # (2)
    schema: NotRequired[Sequence[Mapping[str, SchemaValueTypeType]]],  # (3)
  1. See AnnotationTypeType
  2. See FormatToHeaderKeyType
  3. See SchemaValueTypeType

TagResourceRequestRequestTypeDef#

# TagResourceRequestRequestTypeDef definition

class TagResourceRequestRequestTypeDef(TypedDict):
    resourceArn: str,
    tags: Mapping[str, str],

TsvVersionOptionsTypeDef#

# TsvVersionOptionsTypeDef definition

class TsvVersionOptionsTypeDef(TypedDict):
    annotationType: NotRequired[AnnotationTypeType],  # (1)
    formatToHeader: NotRequired[Mapping[FormatToHeaderKeyType, str]],  # (2)
    schema: NotRequired[Sequence[Mapping[str, SchemaValueTypeType]]],  # (3)
  1. See AnnotationTypeType
  2. See FormatToHeaderKeyType
  3. See SchemaValueTypeType

UntagResourceRequestRequestTypeDef#

# UntagResourceRequestRequestTypeDef definition

class UntagResourceRequestRequestTypeDef(TypedDict):
    resourceArn: str,
    tagKeys: Sequence[str],

UpdateAnnotationStoreRequestRequestTypeDef#

# UpdateAnnotationStoreRequestRequestTypeDef definition

class UpdateAnnotationStoreRequestRequestTypeDef(TypedDict):
    name: str,
    description: NotRequired[str],

UpdateAnnotationStoreVersionRequestRequestTypeDef#

# UpdateAnnotationStoreVersionRequestRequestTypeDef definition

class UpdateAnnotationStoreVersionRequestRequestTypeDef(TypedDict):
    name: str,
    versionName: str,
    description: NotRequired[str],

UpdateRunGroupRequestRequestTypeDef#

# UpdateRunGroupRequestRequestTypeDef definition

class UpdateRunGroupRequestRequestTypeDef(TypedDict):
    id: str,
    name: NotRequired[str],
    maxCpus: NotRequired[int],
    maxRuns: NotRequired[int],
    maxDuration: NotRequired[int],
    maxGpus: NotRequired[int],

UpdateVariantStoreRequestRequestTypeDef#

# UpdateVariantStoreRequestRequestTypeDef definition

class UpdateVariantStoreRequestRequestTypeDef(TypedDict):
    name: str,
    description: NotRequired[str],

UpdateWorkflowRequestRequestTypeDef#

# UpdateWorkflowRequestRequestTypeDef definition

class UpdateWorkflowRequestRequestTypeDef(TypedDict):
    id: str,
    name: NotRequired[str],
    description: NotRequired[str],

AcceptShareResponseTypeDef#

# AcceptShareResponseTypeDef definition

class AcceptShareResponseTypeDef(TypedDict):
    status: ShareStatusType,  # (1)
    ResponseMetadata: ResponseMetadataTypeDef,  # (2)
  1. See ShareStatusType
  2. See ResponseMetadataTypeDef

CompleteMultipartReadSetUploadResponseTypeDef#

# CompleteMultipartReadSetUploadResponseTypeDef definition

class CompleteMultipartReadSetUploadResponseTypeDef(TypedDict):
    readSetId: str,
    ResponseMetadata: ResponseMetadataTypeDef,  # (1)
  1. See ResponseMetadataTypeDef

CreateMultipartReadSetUploadResponseTypeDef#

# CreateMultipartReadSetUploadResponseTypeDef definition

class CreateMultipartReadSetUploadResponseTypeDef(TypedDict):
    sequenceStoreId: str,
    uploadId: str,
    sourceFileType: FileTypeType,  # (1)
    subjectId: str,
    sampleId: str,
    generatedFrom: str,
    referenceArn: str,
    name: str,
    description: str,
    tags: Dict[str, str],
    creationTime: datetime,
    ResponseMetadata: ResponseMetadataTypeDef,  # (2)
  1. See FileTypeType
  2. See ResponseMetadataTypeDef

CreateRunGroupResponseTypeDef#

# CreateRunGroupResponseTypeDef definition

class CreateRunGroupResponseTypeDef(TypedDict):
    arn: str,
    id: str,
    tags: Dict[str, str],
    ResponseMetadata: ResponseMetadataTypeDef,  # (1)
  1. See ResponseMetadataTypeDef

CreateShareResponseTypeDef#

# CreateShareResponseTypeDef definition

class CreateShareResponseTypeDef(TypedDict):
    shareId: str,
    status: ShareStatusType,  # (1)
    shareName: str,
    ResponseMetadata: ResponseMetadataTypeDef,  # (2)
  1. See ShareStatusType
  2. See ResponseMetadataTypeDef

CreateWorkflowResponseTypeDef#

# CreateWorkflowResponseTypeDef definition

class CreateWorkflowResponseTypeDef(TypedDict):
    arn: str,
    id: str,
    status: WorkflowStatusType,  # (1)
    tags: Dict[str, str],
    ResponseMetadata: ResponseMetadataTypeDef,  # (2)
  1. See WorkflowStatusType
  2. See ResponseMetadataTypeDef

DeleteAnnotationStoreResponseTypeDef#

# DeleteAnnotationStoreResponseTypeDef definition

class DeleteAnnotationStoreResponseTypeDef(TypedDict):
    status: StoreStatusType,  # (1)
    ResponseMetadata: ResponseMetadataTypeDef,  # (2)
  1. See StoreStatusType
  2. See ResponseMetadataTypeDef

DeleteShareResponseTypeDef#

# DeleteShareResponseTypeDef definition

class DeleteShareResponseTypeDef(TypedDict):
    status: ShareStatusType,  # (1)
    ResponseMetadata: ResponseMetadataTypeDef,  # (2)
  1. See ShareStatusType
  2. See ResponseMetadataTypeDef

DeleteVariantStoreResponseTypeDef#

# DeleteVari